Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1877

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1876 and EX28DRAFT_1877 are separated by 221 nucleotidesEX28DRAFT_1877 and EX28DRAFT_1878 are separated by 140 nucleotides EX28DRAFT_1876: EX28DRAFT_1876 - Predicted sulfurtransferase, at 1,887,713 to 1,888,762 _1876 EX28DRAFT_1877: EX28DRAFT_1877 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,888,984 to 1,889,910 _1877 EX28DRAFT_1878: EX28DRAFT_1878 - Arabinose efflux permease, at 1,890,051 to 1,891,268 _1878 Position (kb) 1888 1889 1890Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1887.989 kb on - strand, within EX28DRAFT_1876at 1888.108 kb on + strand, within EX28DRAFT_1876at 1888.108 kb on + strand, within EX28DRAFT_1876at 1888.109 kb on - strand, within EX28DRAFT_1876at 1888.167 kb on + strand, within EX28DRAFT_1876at 1888.168 kb on - strand, within EX28DRAFT_1876at 1888.168 kb on - strand, within EX28DRAFT_1876at 1888.168 kb on - strand, within EX28DRAFT_1876at 1888.171 kb on + strand, within EX28DRAFT_1876at 1888.172 kb on - strand, within EX28DRAFT_1876at 1888.172 kb on - strand, within EX28DRAFT_1876at 1888.183 kb on + strand, within EX28DRAFT_1876at 1888.190 kb on - strand, within EX28DRAFT_1876at 1888.282 kb on - strand, within EX28DRAFT_1876at 1888.282 kb on - strand, within EX28DRAFT_1876at 1888.301 kb on - strand, within EX28DRAFT_1876at 1888.359 kb on + strand, within EX28DRAFT_1876at 1888.359 kb on + strand, within EX28DRAFT_1876at 1888.475 kb on - strand, within EX28DRAFT_1876at 1888.555 kb on + strand, within EX28DRAFT_1876at 1888.587 kb on + strand, within EX28DRAFT_1876at 1888.668 kb on + strandat 1888.668 kb on + strandat 1888.668 kb on + strandat 1888.684 kb on + strandat 1888.685 kb on - strandat 1888.751 kb on + strandat 1888.767 kb on + strandat 1888.767 kb on + strandat 1888.768 kb on - strandat 1888.795 kb on - strandat 1888.816 kb on - strandat 1888.816 kb on - strandat 1888.834 kb on - strandat 1888.930 kb on - strandat 1889.092 kb on - strand, within EX28DRAFT_1877at 1889.216 kb on - strand, within EX28DRAFT_1877at 1889.578 kb on + strand, within EX28DRAFT_1877at 1889.616 kb on - strand, within EX28DRAFT_1877at 1889.851 kb on + strandat 1889.853 kb on + strandat 1889.853 kb on + strandat 1889.854 kb on - strandat 1889.854 kb on - strandat 1889.854 kb on - strandat 1889.854 kb on - strandat 1889.908 kb on + strandat 1889.909 kb on - strandat 1889.951 kb on - strandat 1889.978 kb on + strandat 1889.996 kb on - strandat 1890.050 kb on + strandat 1890.050 kb on + strandat 1890.050 kb on + strandat 1890.050 kb on + strandat 1890.050 kb on + strandat 1890.050 kb on + strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.051 kb on - strandat 1890.203 kb on + strand, within EX28DRAFT_1878at 1890.204 kb on - strand, within EX28DRAFT_1878at 1890.220 kb on + strand, within EX28DRAFT_1878at 1890.293 kb on + strand, within EX28DRAFT_1878at 1890.294 kb on - strand, within EX28DRAFT_1878at 1890.333 kb on - strand, within EX28DRAFT_1878at 1890.413 kb on + strand, within EX28DRAFT_1878at 1890.414 kb on - strand, within EX28DRAFT_1878at 1890.742 kb on + strand, within EX28DRAFT_1878at 1890.743 kb on - strand, within EX28DRAFT_1878at 1890.765 kb on - strand, within EX28DRAFT_1878at 1890.777 kb on + strand, within EX28DRAFT_1878at 1890.778 kb on - strand, within EX28DRAFT_1878at 1890.797 kb on + strand, within EX28DRAFT_1878at 1890.810 kb on - strand, within EX28DRAFT_1878at 1890.810 kb on - strand, within EX28DRAFT_1878

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,887,989 - EX28DRAFT_1876 0.26 -0.8
1,888,108 + EX28DRAFT_1876 0.38 -0.4
1,888,108 + EX28DRAFT_1876 0.38 -0.2
1,888,109 - EX28DRAFT_1876 0.38 +0.3
1,888,167 + EX28DRAFT_1876 0.43 -1.0
1,888,168 - EX28DRAFT_1876 0.43 -0.9
1,888,168 - EX28DRAFT_1876 0.43 -2.3
1,888,168 - EX28DRAFT_1876 0.43 -0.1
1,888,171 + EX28DRAFT_1876 0.44 -0.7
1,888,172 - EX28DRAFT_1876 0.44 -0.6
1,888,172 - EX28DRAFT_1876 0.44 -0.5
1,888,183 + EX28DRAFT_1876 0.45 +0.6
1,888,190 - EX28DRAFT_1876 0.45 -0.7
1,888,282 - EX28DRAFT_1876 0.54 -0.4
1,888,282 - EX28DRAFT_1876 0.54 +0.0
1,888,301 - EX28DRAFT_1876 0.56 -1.5
1,888,359 + EX28DRAFT_1876 0.62 -1.3
1,888,359 + EX28DRAFT_1876 0.62 -0.2
1,888,475 - EX28DRAFT_1876 0.73 -1.4
1,888,555 + EX28DRAFT_1876 0.80 +0.1
1,888,587 + EX28DRAFT_1876 0.83 -1.0
1,888,668 + -0.2
1,888,668 + +1.1
1,888,668 + -0.2
1,888,684 + -0.6
1,888,685 - -1.4
1,888,751 + -0.6
1,888,767 + -0.3
1,888,767 + -0.7
1,888,768 - +0.0
1,888,795 - -1.0
1,888,816 - -0.3
1,888,816 - +2.0
1,888,834 - -0.1
1,888,930 - -0.3
1,889,092 - EX28DRAFT_1877 0.12 -1.6
1,889,216 - EX28DRAFT_1877 0.25 -1.0
1,889,578 + EX28DRAFT_1877 0.64 -0.3
1,889,616 - EX28DRAFT_1877 0.68 -0.9
1,889,851 + -0.7
1,889,853 + -0.5
1,889,853 + -0.2
1,889,854 - -0.8
1,889,854 - -0.6
1,889,854 - -0.5
1,889,854 - -0.8
1,889,908 + +0.1
1,889,909 - -1.3
1,889,951 - +0.2
1,889,978 + -0.4
1,889,996 - +0.2
1,890,050 + -0.0
1,890,050 + -0.1
1,890,050 + +0.1
1,890,050 + -0.1
1,890,050 + -0.3
1,890,050 + -0.2
1,890,051 - -0.3
1,890,051 - -0.8
1,890,051 - -0.3
1,890,051 - -1.1
1,890,051 - +0.1
1,890,051 - -0.2
1,890,051 - +0.6
1,890,051 - -0.5
1,890,051 - +0.5
1,890,203 + EX28DRAFT_1878 0.12 -0.1
1,890,204 - EX28DRAFT_1878 0.13 -0.1
1,890,220 + EX28DRAFT_1878 0.14 +0.1
1,890,293 + EX28DRAFT_1878 0.20 -0.2
1,890,294 - EX28DRAFT_1878 0.20 -0.0
1,890,333 - EX28DRAFT_1878 0.23 +0.8
1,890,413 + EX28DRAFT_1878 0.30 +0.0
1,890,414 - EX28DRAFT_1878 0.30 +0.2
1,890,742 + EX28DRAFT_1878 0.57 -0.6
1,890,743 - EX28DRAFT_1878 0.57 -1.1
1,890,765 - EX28DRAFT_1878 0.59 +0.2
1,890,777 + EX28DRAFT_1878 0.60 +1.7
1,890,778 - EX28DRAFT_1878 0.60 +0.2
1,890,797 + EX28DRAFT_1878 0.61 +0.6
1,890,810 - EX28DRAFT_1878 0.62 -3.9
1,890,810 - EX28DRAFT_1878 0.62 -0.8

Or see this region's nucleotide sequence