Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1781 and EX28DRAFT_1782 are separated by 32 nucleotides EX28DRAFT_1782 and EX28DRAFT_1783 are separated by 101 nucleotides EX28DRAFT_1783 and EX28DRAFT_1784 are separated by 0 nucleotides EX28DRAFT_1784 and EX28DRAFT_1785 are separated by 80 nucleotides
EX28DRAFT_1781: EX28DRAFT_1781 - cyanate transporter, at 1,797,083 to 1,798,270
_1781
EX28DRAFT_1782: EX28DRAFT_1782 - Glutamine amidotransferase class-I, at 1,798,303 to 1,799,010
_1782
EX28DRAFT_1783: EX28DRAFT_1783 - Uncharacterized conserved protein, at 1,799,112 to 1,799,456
_1783
EX28DRAFT_1784: EX28DRAFT_1784 - hypothetical protein, at 1,799,457 to 1,799,762
_1784
EX28DRAFT_1785: EX28DRAFT_1785 - Putative hemolysin, at 1,799,843 to 1,800,097
_1785
Position (kb)
1798
1799
1800 Strain fitness (log2 ratio)
-1
0
1 at 1797.460 kb on + strand, within EX28DRAFT_1781 at 1797.504 kb on - strand, within EX28DRAFT_1781 at 1797.504 kb on - strand, within EX28DRAFT_1781 at 1797.761 kb on + strand, within EX28DRAFT_1781 at 1797.970 kb on + strand, within EX28DRAFT_1781 at 1797.971 kb on - strand, within EX28DRAFT_1781 at 1798.461 kb on + strand, within EX28DRAFT_1782 at 1798.462 kb on - strand, within EX28DRAFT_1782 at 1798.462 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.509 kb on + strand, within EX28DRAFT_1782 at 1798.510 kb on - strand, within EX28DRAFT_1782 at 1798.510 kb on - strand, within EX28DRAFT_1782 at 1798.564 kb on - strand, within EX28DRAFT_1782 at 1798.691 kb on + strand, within EX28DRAFT_1782 at 1798.691 kb on + strand, within EX28DRAFT_1782 at 1798.792 kb on - strand, within EX28DRAFT_1782 at 1798.794 kb on - strand, within EX28DRAFT_1782 at 1798.944 kb on + strand at 1798.959 kb on - strand at 1799.035 kb on + strand at 1799.036 kb on - strand at 1799.048 kb on - strand at 1799.048 kb on - strand at 1799.048 kb on - strand at 1799.092 kb on + strand at 1799.092 kb on + strand at 1799.111 kb on + strand at 1799.112 kb on - strand at 1799.112 kb on - strand at 1799.132 kb on - strand at 1799.133 kb on + strand at 1799.257 kb on + strand, within EX28DRAFT_1783 at 1799.258 kb on - strand, within EX28DRAFT_1783 at 1799.258 kb on - strand, within EX28DRAFT_1783 at 1799.262 kb on - strand, within EX28DRAFT_1783 at 1799.313 kb on - strand, within EX28DRAFT_1783 at 1799.392 kb on - strand, within EX28DRAFT_1783 at 1799.428 kb on + strand at 1799.429 kb on - strand at 1799.688 kb on - strand, within EX28DRAFT_1784 at 1799.750 kb on + strand at 1799.750 kb on + strand at 1799.762 kb on + strand at 1799.763 kb on - strand at 1799.763 kb on - strand at 1799.763 kb on - strand at 1799.803 kb on + strand at 1799.809 kb on + strand at 1799.810 kb on - strand at 1799.833 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.927 kb on + strand, within EX28DRAFT_1785 at 1800.001 kb on + strand, within EX28DRAFT_1785
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,797,460 + EX28DRAFT_1781 0.32 +0.3 1,797,504 - EX28DRAFT_1781 0.35 +0.2 1,797,504 - EX28DRAFT_1781 0.35 -0.7 1,797,761 + EX28DRAFT_1781 0.57 -0.7 1,797,970 + EX28DRAFT_1781 0.75 +0.6 1,797,971 - EX28DRAFT_1781 0.75 -0.5 1,798,461 + EX28DRAFT_1782 0.22 -0.3 1,798,462 - EX28DRAFT_1782 0.22 -0.3 1,798,462 - EX28DRAFT_1782 0.22 +0.1 1,798,506 - EX28DRAFT_1782 0.29 -1.0 1,798,506 - EX28DRAFT_1782 0.29 -0.1 1,798,506 - EX28DRAFT_1782 0.29 -0.6 1,798,506 - EX28DRAFT_1782 0.29 +0.3 1,798,506 - EX28DRAFT_1782 0.29 -0.3 1,798,506 - EX28DRAFT_1782 0.29 -0.1 1,798,509 + EX28DRAFT_1782 0.29 +0.7 1,798,510 - EX28DRAFT_1782 0.29 -0.3 1,798,510 - EX28DRAFT_1782 0.29 +1.0 1,798,564 - EX28DRAFT_1782 0.37 +0.4 1,798,691 + EX28DRAFT_1782 0.55 -0.6 1,798,691 + EX28DRAFT_1782 0.55 +0.0 1,798,792 - EX28DRAFT_1782 0.69 -0.2 1,798,794 - EX28DRAFT_1782 0.69 -1.7 1,798,944 + -0.7 1,798,959 - +0.6 1,799,035 + +0.4 1,799,036 - +1.4 1,799,048 - +0.7 1,799,048 - +0.1 1,799,048 - -0.1 1,799,092 + -0.5 1,799,092 + +0.2 1,799,111 + +0.2 1,799,112 - +0.1 1,799,112 - -0.9 1,799,132 - +0.6 1,799,133 + -0.0 1,799,257 + EX28DRAFT_1783 0.42 -0.5 1,799,258 - EX28DRAFT_1783 0.42 -0.3 1,799,258 - EX28DRAFT_1783 0.42 -0.1 1,799,262 - EX28DRAFT_1783 0.43 -0.1 1,799,313 - EX28DRAFT_1783 0.58 -0.5 1,799,392 - EX28DRAFT_1783 0.81 -0.4 1,799,428 + +1.7 1,799,429 - +0.0 1,799,688 - EX28DRAFT_1784 0.75 +0.1 1,799,750 + +0.0 1,799,750 + +1.5 1,799,762 + +0.2 1,799,763 - +0.4 1,799,763 - +0.3 1,799,763 - -0.0 1,799,803 + -0.9 1,799,809 + -0.4 1,799,810 - +0.4 1,799,833 + +0.0 1,799,835 + -0.4 1,799,835 + -0.2 1,799,835 + -0.3 1,799,835 + +0.6 1,799,835 + +0.3 1,799,835 + +0.9 1,799,835 + +0.3 1,799,836 - -0.3 1,799,836 - -0.5 1,799,836 - +0.2 1,799,836 - +0.2 1,799,836 - -0.3 1,799,927 + EX28DRAFT_1785 0.33 +0.2 1,800,001 + EX28DRAFT_1785 0.62 -0.3
Or see this region's nucleotide sequence