Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1726 and EX28DRAFT_1727 are separated by 701 nucleotides EX28DRAFT_1727 and EX28DRAFT_1728 are separated by 229 nucleotides
EX28DRAFT_1726: EX28DRAFT_1726 - threonyl-tRNA synthetase (EC 6.1.1.3), at 1,740,186 to 1,742,114
_1726
EX28DRAFT_1727: EX28DRAFT_1727 - Putative salt-induced outer membrane protein, at 1,742,816 to 1,743,640
_1727
EX28DRAFT_1728: EX28DRAFT_1728 - hexose kinase, 1-phosphofructokinase family, at 1,743,870 to 1,744,802
_1728
Position (kb)
1742
1743
1744 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1742.256 kb on - strand at 1742.281 kb on - strand at 1742.399 kb on + strand at 1742.492 kb on + strand at 1742.493 kb on - strand at 1742.493 kb on - strand at 1742.493 kb on - strand at 1742.577 kb on - strand at 1742.622 kb on + strand at 1742.623 kb on - strand at 1742.623 kb on - strand at 1742.705 kb on - strand at 1742.798 kb on - strand at 1742.814 kb on + strand at 1742.815 kb on - strand at 1742.815 kb on - strand at 1742.818 kb on - strand at 1742.825 kb on - strand at 1742.825 kb on - strand at 1742.904 kb on + strand, within EX28DRAFT_1727 at 1742.904 kb on + strand, within EX28DRAFT_1727 at 1743.036 kb on + strand, within EX28DRAFT_1727 at 1743.036 kb on + strand, within EX28DRAFT_1727 at 1743.037 kb on - strand, within EX28DRAFT_1727 at 1743.037 kb on - strand, within EX28DRAFT_1727 at 1743.202 kb on - strand, within EX28DRAFT_1727 at 1743.237 kb on + strand, within EX28DRAFT_1727 at 1743.244 kb on - strand, within EX28DRAFT_1727 at 1743.259 kb on - strand, within EX28DRAFT_1727 at 1743.266 kb on - strand, within EX28DRAFT_1727 at 1743.282 kb on + strand, within EX28DRAFT_1727 at 1743.283 kb on - strand, within EX28DRAFT_1727 at 1743.374 kb on - strand, within EX28DRAFT_1727 at 1743.423 kb on + strand, within EX28DRAFT_1727 at 1743.592 kb on - strand at 1743.687 kb on + strand at 1743.687 kb on + strand at 1743.692 kb on + strand at 1743.692 kb on + strand at 1743.752 kb on - strand at 1743.753 kb on + strand at 1743.754 kb on - strand at 1743.808 kb on + strand at 1743.808 kb on + strand at 1743.855 kb on + strand at 1743.879 kb on - strand at 1743.883 kb on - strand at 1743.883 kb on - strand at 1743.885 kb on - strand at 1744.252 kb on + strand, within EX28DRAFT_1728 at 1744.442 kb on - strand, within EX28DRAFT_1728 at 1744.442 kb on - strand, within EX28DRAFT_1728 at 1744.532 kb on - strand, within EX28DRAFT_1728 at 1744.532 kb on - strand, within EX28DRAFT_1728
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,742,256 - -1.7 1,742,281 - +0.7 1,742,399 + -3.4 1,742,492 + -0.2 1,742,493 - +0.2 1,742,493 - +0.9 1,742,493 - +1.1 1,742,577 - +0.7 1,742,622 + -0.0 1,742,623 - -0.6 1,742,623 - -0.2 1,742,705 - -0.6 1,742,798 - -4.0 1,742,814 + +0.7 1,742,815 - +0.9 1,742,815 - +0.6 1,742,818 - +0.1 1,742,825 - -1.2 1,742,825 - -0.1 1,742,904 + EX28DRAFT_1727 0.11 +0.6 1,742,904 + EX28DRAFT_1727 0.11 -0.2 1,743,036 + EX28DRAFT_1727 0.27 +0.1 1,743,036 + EX28DRAFT_1727 0.27 +0.4 1,743,037 - EX28DRAFT_1727 0.27 +0.1 1,743,037 - EX28DRAFT_1727 0.27 -0.2 1,743,202 - EX28DRAFT_1727 0.47 +0.7 1,743,237 + EX28DRAFT_1727 0.51 +0.0 1,743,244 - EX28DRAFT_1727 0.52 +0.1 1,743,259 - EX28DRAFT_1727 0.54 +0.4 1,743,266 - EX28DRAFT_1727 0.55 -0.1 1,743,282 + EX28DRAFT_1727 0.56 -0.1 1,743,283 - EX28DRAFT_1727 0.57 +0.9 1,743,374 - EX28DRAFT_1727 0.68 +0.8 1,743,423 + EX28DRAFT_1727 0.74 -0.3 1,743,592 - -3.0 1,743,687 + +0.2 1,743,687 + -0.0 1,743,692 + +0.3 1,743,692 + -0.8 1,743,752 - -0.8 1,743,753 + -0.2 1,743,754 - +0.7 1,743,808 + -0.2 1,743,808 + -1.8 1,743,855 + -0.1 1,743,879 - -0.2 1,743,883 - +0.1 1,743,883 - -0.1 1,743,885 - +0.2 1,744,252 + EX28DRAFT_1728 0.41 +1.4 1,744,442 - EX28DRAFT_1728 0.61 -0.1 1,744,442 - EX28DRAFT_1728 0.61 -0.2 1,744,532 - EX28DRAFT_1728 0.71 +0.1 1,744,532 - EX28DRAFT_1728 0.71 -0.1
Or see this region's nucleotide sequence