Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1347 and EX28DRAFT_1348 are separated by 13 nucleotides EX28DRAFT_1348 and EX28DRAFT_1349 are separated by 45 nucleotides EX28DRAFT_1349 and EX28DRAFT_1350 are separated by 189 nucleotides
EX28DRAFT_1347: EX28DRAFT_1347 - transcriptional regulator, DeoR family, at 1,361,559 to 1,362,302
_1347
EX28DRAFT_1348: EX28DRAFT_1348 - Predicted dehydrogenases and related proteins, at 1,362,316 to 1,363,383
_1348
EX28DRAFT_1349: EX28DRAFT_1349 - Cytochrome B561, at 1,363,429 to 1,363,959
_1349
EX28DRAFT_1350: EX28DRAFT_1350 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 1,364,149 to 1,365,150
_1350
Position (kb)
1362
1363
1364 Strain fitness (log2 ratio)
-2
-1
0
1 at 1361.351 kb on - strand at 1361.419 kb on + strand at 1361.420 kb on - strand at 1361.583 kb on + strand at 1361.583 kb on + strand at 1361.584 kb on - strand at 1361.584 kb on - strand at 1361.660 kb on + strand, within EX28DRAFT_1347 at 1361.907 kb on - strand, within EX28DRAFT_1347 at 1361.936 kb on + strand, within EX28DRAFT_1347 at 1362.238 kb on + strand at 1362.239 kb on - strand at 1362.300 kb on + strand at 1362.322 kb on - strand at 1362.322 kb on - strand at 1362.369 kb on + strand at 1362.412 kb on - strand at 1362.470 kb on + strand, within EX28DRAFT_1348 at 1362.720 kb on + strand, within EX28DRAFT_1348 at 1362.879 kb on - strand, within EX28DRAFT_1348 at 1362.968 kb on + strand, within EX28DRAFT_1348 at 1362.969 kb on - strand, within EX28DRAFT_1348 at 1362.984 kb on + strand, within EX28DRAFT_1348 at 1362.985 kb on - strand, within EX28DRAFT_1348 at 1363.216 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.220 kb on - strand, within EX28DRAFT_1348 at 1363.220 kb on - strand, within EX28DRAFT_1348 at 1363.230 kb on - strand, within EX28DRAFT_1348 at 1363.381 kb on + strand at 1363.430 kb on + strand at 1363.467 kb on + strand at 1363.467 kb on + strand at 1363.481 kb on + strand at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.678 kb on - strand, within EX28DRAFT_1349 at 1363.689 kb on - strand, within EX28DRAFT_1349 at 1363.834 kb on - strand, within EX28DRAFT_1349 at 1363.834 kb on - strand, within EX28DRAFT_1349 at 1363.890 kb on - strand, within EX28DRAFT_1349 at 1363.890 kb on - strand, within EX28DRAFT_1349 at 1363.944 kb on + strand at 1363.945 kb on - strand at 1363.945 kb on - strand at 1363.946 kb on + strand at 1363.996 kb on + strand at 1364.136 kb on - strand at 1364.195 kb on + strand at 1364.299 kb on + strand, within EX28DRAFT_1350 at 1364.299 kb on + strand, within EX28DRAFT_1350 at 1364.299 kb on + strand, within EX28DRAFT_1350 at 1364.299 kb on + strand, within EX28DRAFT_1350
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,361,351 - -0.8 1,361,419 + -0.0 1,361,420 - -0.5 1,361,583 + +0.6 1,361,583 + +0.2 1,361,584 - +1.5 1,361,584 - +0.4 1,361,660 + EX28DRAFT_1347 0.14 -0.0 1,361,907 - EX28DRAFT_1347 0.47 -0.1 1,361,936 + EX28DRAFT_1347 0.51 +1.2 1,362,238 + -0.1 1,362,239 - +0.6 1,362,300 + +0.1 1,362,322 - -2.2 1,362,322 - +0.1 1,362,369 + +0.0 1,362,412 - +0.3 1,362,470 + EX28DRAFT_1348 0.14 +0.3 1,362,720 + EX28DRAFT_1348 0.38 +0.9 1,362,879 - EX28DRAFT_1348 0.53 -0.1 1,362,968 + EX28DRAFT_1348 0.61 +0.3 1,362,969 - EX28DRAFT_1348 0.61 -0.1 1,362,984 + EX28DRAFT_1348 0.63 +0.2 1,362,985 - EX28DRAFT_1348 0.63 +1.2 1,363,216 + EX28DRAFT_1348 0.84 +0.0 1,363,219 + EX28DRAFT_1348 0.85 -0.5 1,363,219 + EX28DRAFT_1348 0.85 -1.6 1,363,219 + EX28DRAFT_1348 0.85 +0.2 1,363,220 - EX28DRAFT_1348 0.85 +0.8 1,363,220 - EX28DRAFT_1348 0.85 +0.8 1,363,230 - EX28DRAFT_1348 0.86 +0.1 1,363,381 + +0.1 1,363,430 + -0.0 1,363,467 + +0.5 1,363,467 + -0.3 1,363,481 + -0.8 1,363,482 - EX28DRAFT_1349 0.10 +0.5 1,363,482 - EX28DRAFT_1349 0.10 +0.3 1,363,482 - EX28DRAFT_1349 0.10 +0.9 1,363,482 - EX28DRAFT_1349 0.10 +0.8 1,363,644 - EX28DRAFT_1349 0.40 -2.3 1,363,644 - EX28DRAFT_1349 0.40 -0.1 1,363,644 - EX28DRAFT_1349 0.40 +0.2 1,363,644 - EX28DRAFT_1349 0.40 +1.0 1,363,644 - EX28DRAFT_1349 0.40 -0.5 1,363,678 - EX28DRAFT_1349 0.47 +0.6 1,363,689 - EX28DRAFT_1349 0.49 -0.1 1,363,834 - EX28DRAFT_1349 0.76 -0.3 1,363,834 - EX28DRAFT_1349 0.76 +0.2 1,363,890 - EX28DRAFT_1349 0.87 -0.0 1,363,890 - EX28DRAFT_1349 0.87 -0.5 1,363,944 + +0.1 1,363,945 - -0.2 1,363,945 - -0.7 1,363,946 + -0.2 1,363,996 + +0.4 1,364,136 - -0.9 1,364,195 + -0.0 1,364,299 + EX28DRAFT_1350 0.15 +0.1 1,364,299 + EX28DRAFT_1350 0.15 +0.2 1,364,299 + EX28DRAFT_1350 0.15 -0.0 1,364,299 + EX28DRAFT_1350 0.15 +1.4
Or see this region's nucleotide sequence