Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1259 and EX28DRAFT_1260 are separated by 3 nucleotides EX28DRAFT_1260 and EX28DRAFT_1261 are separated by 13 nucleotides
EX28DRAFT_1259: EX28DRAFT_1259 - Uncharacterized conserved protein, at 1,277,280 to 1,277,948
_1259
EX28DRAFT_1260: EX28DRAFT_1260 - hypothetical protein, at 1,277,952 to 1,278,662
_1260
EX28DRAFT_1261: EX28DRAFT_1261 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,278,676 to 1,279,944
_1261
Position (kb)
1277
1278
1279 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1276.965 kb on + strand at 1276.966 kb on - strand at 1277.030 kb on - strand at 1277.034 kb on - strand at 1277.052 kb on + strand at 1277.053 kb on - strand at 1277.053 kb on - strand at 1277.053 kb on - strand at 1277.169 kb on + strand at 1277.170 kb on - strand at 1277.188 kb on + strand at 1277.210 kb on - strand at 1277.210 kb on - strand at 1277.216 kb on + strand at 1277.235 kb on + strand at 1277.235 kb on + strand at 1277.236 kb on - strand at 1277.240 kb on - strand at 1277.240 kb on - strand at 1277.240 kb on - strand at 1277.249 kb on - strand at 1277.250 kb on + strand at 1277.250 kb on + strand at 1277.279 kb on + strand at 1277.279 kb on + strand at 1277.279 kb on + strand at 1277.320 kb on - strand at 1277.328 kb on + strand at 1277.328 kb on + strand at 1277.361 kb on + strand, within EX28DRAFT_1259 at 1277.466 kb on + strand, within EX28DRAFT_1259 at 1277.467 kb on - strand, within EX28DRAFT_1259 at 1277.486 kb on + strand, within EX28DRAFT_1259 at 1277.487 kb on - strand, within EX28DRAFT_1259 at 1277.907 kb on - strand at 1277.947 kb on - strand at 1278.466 kb on - strand, within EX28DRAFT_1260 at 1278.510 kb on - strand, within EX28DRAFT_1260 at 1278.510 kb on - strand, within EX28DRAFT_1260 at 1278.539 kb on + strand, within EX28DRAFT_1260 at 1278.688 kb on + strand at 1278.776 kb on + strand at 1278.776 kb on + strand at 1278.871 kb on + strand, within EX28DRAFT_1261 at 1278.979 kb on - strand, within EX28DRAFT_1261 at 1278.979 kb on - strand, within EX28DRAFT_1261 at 1279.146 kb on + strand, within EX28DRAFT_1261 at 1279.147 kb on - strand, within EX28DRAFT_1261 at 1279.147 kb on - strand, within EX28DRAFT_1261 at 1279.283 kb on - strand, within EX28DRAFT_1261 at 1279.397 kb on + strand, within EX28DRAFT_1261 at 1279.397 kb on + strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.440 kb on + strand, within EX28DRAFT_1261 at 1279.441 kb on - strand, within EX28DRAFT_1261 at 1279.546 kb on - strand, within EX28DRAFT_1261 at 1279.596 kb on + strand, within EX28DRAFT_1261 at 1279.647 kb on + strand, within EX28DRAFT_1261 at 1279.648 kb on - strand, within EX28DRAFT_1261 at 1279.652 kb on + strand, within EX28DRAFT_1261 at 1279.652 kb on + strand, within EX28DRAFT_1261
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,276,965 + +0.3 1,276,966 - +0.4 1,277,030 - -0.5 1,277,034 - +0.7 1,277,052 + -0.0 1,277,053 - -1.1 1,277,053 - -0.4 1,277,053 - -0.4 1,277,169 + +0.2 1,277,170 - +0.5 1,277,188 + +0.1 1,277,210 - +0.1 1,277,210 - +0.2 1,277,216 + -0.9 1,277,235 + -0.1 1,277,235 + +0.4 1,277,236 - -0.1 1,277,240 - -0.3 1,277,240 - +0.1 1,277,240 - -0.1 1,277,249 - +0.1 1,277,250 + +0.2 1,277,250 + -0.0 1,277,279 + +0.6 1,277,279 + +0.7 1,277,279 + +0.1 1,277,320 - -0.1 1,277,328 + +0.0 1,277,328 + +0.9 1,277,361 + EX28DRAFT_1259 0.12 +1.1 1,277,466 + EX28DRAFT_1259 0.28 -0.3 1,277,467 - EX28DRAFT_1259 0.28 +0.7 1,277,486 + EX28DRAFT_1259 0.31 -0.1 1,277,487 - EX28DRAFT_1259 0.31 -0.0 1,277,907 - +2.2 1,277,947 - +1.9 1,278,466 - EX28DRAFT_1260 0.72 -2.9 1,278,510 - EX28DRAFT_1260 0.78 -0.2 1,278,510 - EX28DRAFT_1260 0.78 +0.2 1,278,539 + EX28DRAFT_1260 0.83 -3.0 1,278,688 + -0.1 1,278,776 + +0.5 1,278,776 + +1.9 1,278,871 + EX28DRAFT_1261 0.15 -1.0 1,278,979 - EX28DRAFT_1261 0.24 +1.6 1,278,979 - EX28DRAFT_1261 0.24 +1.8 1,279,146 + EX28DRAFT_1261 0.37 -0.2 1,279,147 - EX28DRAFT_1261 0.37 -0.2 1,279,147 - EX28DRAFT_1261 0.37 -0.3 1,279,283 - EX28DRAFT_1261 0.48 -0.3 1,279,397 + EX28DRAFT_1261 0.57 -0.2 1,279,397 + EX28DRAFT_1261 0.57 -0.1 1,279,398 - EX28DRAFT_1261 0.57 +0.1 1,279,398 - EX28DRAFT_1261 0.57 +0.3 1,279,398 - EX28DRAFT_1261 0.57 -0.0 1,279,398 - EX28DRAFT_1261 0.57 +0.2 1,279,440 + EX28DRAFT_1261 0.60 -1.4 1,279,441 - EX28DRAFT_1261 0.60 -0.1 1,279,546 - EX28DRAFT_1261 0.69 +0.1 1,279,596 + EX28DRAFT_1261 0.72 -0.0 1,279,647 + EX28DRAFT_1261 0.77 -0.1 1,279,648 - EX28DRAFT_1261 0.77 -0.0 1,279,652 + EX28DRAFT_1261 0.77 +0.0 1,279,652 + EX28DRAFT_1261 0.77 +1.1
Or see this region's nucleotide sequence