Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1245 and EX28DRAFT_1246 overlap by 1 nucleotides EX28DRAFT_1246 and EX28DRAFT_1247 are separated by 8 nucleotides
EX28DRAFT_1245: EX28DRAFT_1245 - Cytochrome bd-type quinol oxidase, subunit 1, at 1,261,818 to 1,263,221
_1245
EX28DRAFT_1246: EX28DRAFT_1246 - cytochrome d oxidase, subunit II (cydB), at 1,263,221 to 1,264,231
_1246
EX28DRAFT_1247: EX28DRAFT_1247 - Glycosidases, at 1,264,240 to 1,265,865
_1247
Position (kb)
1263
1264
1265 Strain fitness (log2 ratio)
-2
-1
0
1 at 1262.375 kb on + strand, within EX28DRAFT_1245 at 1262.376 kb on - strand, within EX28DRAFT_1245 at 1262.534 kb on + strand, within EX28DRAFT_1245 at 1262.534 kb on + strand, within EX28DRAFT_1245 at 1262.534 kb on + strand, within EX28DRAFT_1245 at 1262.535 kb on - strand, within EX28DRAFT_1245 at 1262.535 kb on - strand, within EX28DRAFT_1245 at 1262.670 kb on + strand, within EX28DRAFT_1245 at 1262.671 kb on - strand, within EX28DRAFT_1245 at 1262.671 kb on - strand, within EX28DRAFT_1245 at 1262.828 kb on + strand, within EX28DRAFT_1245 at 1262.840 kb on + strand, within EX28DRAFT_1245 at 1262.986 kb on - strand, within EX28DRAFT_1245 at 1263.069 kb on + strand, within EX28DRAFT_1245 at 1263.100 kb on - strand at 1263.100 kb on - strand at 1263.116 kb on + strand at 1263.116 kb on + strand at 1263.233 kb on - strand at 1263.278 kb on + strand at 1263.278 kb on + strand at 1263.278 kb on + strand at 1263.279 kb on - strand at 1263.323 kb on - strand, within EX28DRAFT_1246 at 1263.323 kb on - strand, within EX28DRAFT_1246 at 1263.447 kb on - strand, within EX28DRAFT_1246 at 1263.447 kb on - strand, within EX28DRAFT_1246 at 1263.492 kb on + strand, within EX28DRAFT_1246 at 1263.492 kb on + strand, within EX28DRAFT_1246 at 1263.493 kb on - strand, within EX28DRAFT_1246 at 1263.493 kb on - strand, within EX28DRAFT_1246 at 1263.570 kb on - strand, within EX28DRAFT_1246 at 1263.876 kb on - strand, within EX28DRAFT_1246 at 1264.021 kb on + strand, within EX28DRAFT_1246 at 1264.022 kb on - strand, within EX28DRAFT_1246 at 1264.069 kb on + strand, within EX28DRAFT_1246 at 1264.126 kb on + strand, within EX28DRAFT_1246 at 1264.170 kb on - strand at 1264.184 kb on + strand at 1264.184 kb on + strand at 1264.187 kb on + strand at 1264.187 kb on + strand at 1264.188 kb on - strand at 1264.239 kb on + strand at 1264.240 kb on - strand at 1264.255 kb on - strand at 1264.267 kb on - strand at 1264.267 kb on - strand at 1264.267 kb on - strand at 1264.295 kb on - strand at 1264.295 kb on - strand at 1264.352 kb on - strand at 1264.352 kb on - strand at 1264.397 kb on - strand at 1264.469 kb on + strand, within EX28DRAFT_1247 at 1264.609 kb on + strand, within EX28DRAFT_1247 at 1264.610 kb on - strand, within EX28DRAFT_1247 at 1264.613 kb on - strand, within EX28DRAFT_1247 at 1264.705 kb on + strand, within EX28DRAFT_1247 at 1264.705 kb on + strand, within EX28DRAFT_1247 at 1264.706 kb on - strand, within EX28DRAFT_1247 at 1264.708 kb on + strand, within EX28DRAFT_1247 at 1264.750 kb on - strand, within EX28DRAFT_1247 at 1264.899 kb on + strand, within EX28DRAFT_1247 at 1264.899 kb on + strand, within EX28DRAFT_1247 at 1264.972 kb on + strand, within EX28DRAFT_1247 at 1264.972 kb on + strand, within EX28DRAFT_1247 at 1264.972 kb on + strand, within EX28DRAFT_1247 at 1264.973 kb on - strand, within EX28DRAFT_1247 at 1264.973 kb on - strand, within EX28DRAFT_1247 at 1264.973 kb on - strand, within EX28DRAFT_1247 at 1264.974 kb on + strand, within EX28DRAFT_1247 at 1264.974 kb on + strand, within EX28DRAFT_1247 at 1264.974 kb on + strand, within EX28DRAFT_1247 at 1265.035 kb on + strand, within EX28DRAFT_1247 at 1265.035 kb on + strand, within EX28DRAFT_1247 at 1265.036 kb on - strand, within EX28DRAFT_1247
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,262,375 + EX28DRAFT_1245 0.40 -0.1 1,262,376 - EX28DRAFT_1245 0.40 +0.3 1,262,534 + EX28DRAFT_1245 0.51 -0.3 1,262,534 + EX28DRAFT_1245 0.51 -0.6 1,262,534 + EX28DRAFT_1245 0.51 -0.2 1,262,535 - EX28DRAFT_1245 0.51 +0.6 1,262,535 - EX28DRAFT_1245 0.51 +0.3 1,262,670 + EX28DRAFT_1245 0.61 -1.8 1,262,671 - EX28DRAFT_1245 0.61 -0.1 1,262,671 - EX28DRAFT_1245 0.61 -0.1 1,262,828 + EX28DRAFT_1245 0.72 -0.8 1,262,840 + EX28DRAFT_1245 0.73 +0.3 1,262,986 - EX28DRAFT_1245 0.83 +0.6 1,263,069 + EX28DRAFT_1245 0.89 +0.4 1,263,100 - +0.5 1,263,100 - +0.6 1,263,116 + -0.1 1,263,116 + +0.3 1,263,233 - -0.3 1,263,278 + -1.5 1,263,278 + -0.1 1,263,278 + +0.5 1,263,279 - +0.3 1,263,323 - EX28DRAFT_1246 0.10 +0.7 1,263,323 - EX28DRAFT_1246 0.10 -0.3 1,263,447 - EX28DRAFT_1246 0.22 +0.0 1,263,447 - EX28DRAFT_1246 0.22 +1.3 1,263,492 + EX28DRAFT_1246 0.27 +0.4 1,263,492 + EX28DRAFT_1246 0.27 -0.1 1,263,493 - EX28DRAFT_1246 0.27 +0.3 1,263,493 - EX28DRAFT_1246 0.27 +0.0 1,263,570 - EX28DRAFT_1246 0.35 +1.7 1,263,876 - EX28DRAFT_1246 0.65 +0.4 1,264,021 + EX28DRAFT_1246 0.79 -0.2 1,264,022 - EX28DRAFT_1246 0.79 +0.5 1,264,069 + EX28DRAFT_1246 0.84 +0.1 1,264,126 + EX28DRAFT_1246 0.90 -0.1 1,264,170 - -0.0 1,264,184 + +0.1 1,264,184 + +0.1 1,264,187 + -0.3 1,264,187 + -0.2 1,264,188 - -0.0 1,264,239 + +0.4 1,264,240 - +0.5 1,264,255 - -1.7 1,264,267 - +0.1 1,264,267 - -0.1 1,264,267 - -0.5 1,264,295 - -2.0 1,264,295 - +0.7 1,264,352 - +0.2 1,264,352 - +0.5 1,264,397 - -0.0 1,264,469 + EX28DRAFT_1247 0.14 +0.5 1,264,609 + EX28DRAFT_1247 0.23 -0.1 1,264,610 - EX28DRAFT_1247 0.23 +0.5 1,264,613 - EX28DRAFT_1247 0.23 -0.1 1,264,705 + EX28DRAFT_1247 0.29 -0.3 1,264,705 + EX28DRAFT_1247 0.29 +0.2 1,264,706 - EX28DRAFT_1247 0.29 +0.3 1,264,708 + EX28DRAFT_1247 0.29 +0.4 1,264,750 - EX28DRAFT_1247 0.31 -0.5 1,264,899 + EX28DRAFT_1247 0.41 +0.2 1,264,899 + EX28DRAFT_1247 0.41 +0.3 1,264,972 + EX28DRAFT_1247 0.45 +0.2 1,264,972 + EX28DRAFT_1247 0.45 -0.4 1,264,972 + EX28DRAFT_1247 0.45 -0.6 1,264,973 - EX28DRAFT_1247 0.45 -0.3 1,264,973 - EX28DRAFT_1247 0.45 +0.5 1,264,973 - EX28DRAFT_1247 0.45 -0.2 1,264,974 + EX28DRAFT_1247 0.45 -1.1 1,264,974 + EX28DRAFT_1247 0.45 -1.7 1,264,974 + EX28DRAFT_1247 0.45 -0.9 1,265,035 + EX28DRAFT_1247 0.49 -0.2 1,265,035 + EX28DRAFT_1247 0.49 +0.4 1,265,036 - EX28DRAFT_1247 0.49 -0.0
Or see this region's nucleotide sequence