Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1162

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1161 and EX28DRAFT_1162 are separated by 32 nucleotidesEX28DRAFT_1162 and EX28DRAFT_1163 are separated by 117 nucleotides EX28DRAFT_1161: EX28DRAFT_1161 - Protein of unknown function (DUF2891), at 1,181,600 to 1,182,595 _1161 EX28DRAFT_1162: EX28DRAFT_1162 - Major Facilitator Superfamily, at 1,182,628 to 1,184,043 _1162 EX28DRAFT_1163: EX28DRAFT_1163 - Transcriptional regulator, at 1,184,161 to 1,185,066 _1163 Position (kb) 1182 1183 1184 1185Strain fitness (log2 ratio) -2 -1 0 1at 1181.651 kb on + strandat 1181.651 kb on + strandat 1181.667 kb on - strandat 1181.892 kb on - strand, within EX28DRAFT_1161at 1182.054 kb on - strand, within EX28DRAFT_1161at 1182.095 kb on + strand, within EX28DRAFT_1161at 1182.194 kb on + strand, within EX28DRAFT_1161at 1182.245 kb on + strand, within EX28DRAFT_1161at 1182.245 kb on + strand, within EX28DRAFT_1161at 1182.245 kb on + strand, within EX28DRAFT_1161at 1182.442 kb on + strand, within EX28DRAFT_1161at 1182.443 kb on - strand, within EX28DRAFT_1161at 1182.448 kb on + strand, within EX28DRAFT_1161at 1182.545 kb on + strandat 1182.546 kb on - strandat 1182.775 kb on + strand, within EX28DRAFT_1162at 1182.842 kb on + strand, within EX28DRAFT_1162at 1182.842 kb on + strand, within EX28DRAFT_1162at 1182.943 kb on - strand, within EX28DRAFT_1162at 1183.133 kb on + strand, within EX28DRAFT_1162at 1183.133 kb on + strand, within EX28DRAFT_1162at 1183.284 kb on + strand, within EX28DRAFT_1162at 1183.377 kb on + strand, within EX28DRAFT_1162at 1183.544 kb on - strand, within EX28DRAFT_1162at 1183.698 kb on + strand, within EX28DRAFT_1162at 1183.759 kb on - strand, within EX28DRAFT_1162at 1184.035 kb on + strandat 1184.059 kb on + strandat 1184.065 kb on + strandat 1184.066 kb on - strandat 1184.066 kb on - strandat 1184.080 kb on + strandat 1184.082 kb on + strandat 1184.083 kb on - strandat 1184.138 kb on - strandat 1184.145 kb on + strandat 1184.146 kb on - strandat 1184.179 kb on - strandat 1184.307 kb on + strand, within EX28DRAFT_1163at 1184.332 kb on - strand, within EX28DRAFT_1163at 1184.502 kb on + strand, within EX28DRAFT_1163at 1184.503 kb on - strand, within EX28DRAFT_1163at 1184.534 kb on + strand, within EX28DRAFT_1163at 1184.535 kb on - strand, within EX28DRAFT_1163at 1184.535 kb on - strand, within EX28DRAFT_1163at 1184.535 kb on - strand, within EX28DRAFT_1163at 1184.728 kb on + strand, within EX28DRAFT_1163at 1184.933 kb on + strand, within EX28DRAFT_1163

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,181,651 + +0.5
1,181,651 + +0.9
1,181,667 - -0.0
1,181,892 - EX28DRAFT_1161 0.29 +0.2
1,182,054 - EX28DRAFT_1161 0.46 -0.3
1,182,095 + EX28DRAFT_1161 0.50 +0.5
1,182,194 + EX28DRAFT_1161 0.60 +0.0
1,182,245 + EX28DRAFT_1161 0.65 -2.2
1,182,245 + EX28DRAFT_1161 0.65 +0.1
1,182,245 + EX28DRAFT_1161 0.65 -0.8
1,182,442 + EX28DRAFT_1161 0.85 +0.5
1,182,443 - EX28DRAFT_1161 0.85 +0.1
1,182,448 + EX28DRAFT_1161 0.85 -0.1
1,182,545 + -0.1
1,182,546 - +0.4
1,182,775 + EX28DRAFT_1162 0.10 -0.2
1,182,842 + EX28DRAFT_1162 0.15 -0.1
1,182,842 + EX28DRAFT_1162 0.15 +0.3
1,182,943 - EX28DRAFT_1162 0.22 -0.3
1,183,133 + EX28DRAFT_1162 0.36 +0.6
1,183,133 + EX28DRAFT_1162 0.36 +0.1
1,183,284 + EX28DRAFT_1162 0.46 -0.3
1,183,377 + EX28DRAFT_1162 0.53 -0.0
1,183,544 - EX28DRAFT_1162 0.65 -0.6
1,183,698 + EX28DRAFT_1162 0.76 +0.2
1,183,759 - EX28DRAFT_1162 0.80 +0.5
1,184,035 + +0.1
1,184,059 + +0.6
1,184,065 + -0.3
1,184,066 - -0.4
1,184,066 - -0.2
1,184,080 + +0.3
1,184,082 + +0.2
1,184,083 - +0.2
1,184,138 - -0.3
1,184,145 + -0.9
1,184,146 - -0.3
1,184,179 - -0.3
1,184,307 + EX28DRAFT_1163 0.16 -0.1
1,184,332 - EX28DRAFT_1163 0.19 -0.0
1,184,502 + EX28DRAFT_1163 0.38 -0.2
1,184,503 - EX28DRAFT_1163 0.38 -0.1
1,184,534 + EX28DRAFT_1163 0.41 +0.5
1,184,535 - EX28DRAFT_1163 0.41 +0.1
1,184,535 - EX28DRAFT_1163 0.41 -0.0
1,184,535 - EX28DRAFT_1163 0.41 +0.3
1,184,728 + EX28DRAFT_1163 0.63 +0.1
1,184,933 + EX28DRAFT_1163 0.85 -0.8

Or see this region's nucleotide sequence