Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1155 and EX28DRAFT_1156 overlap by 4 nucleotides EX28DRAFT_1156 and EX28DRAFT_1157 are separated by 15 nucleotides
EX28DRAFT_1155: EX28DRAFT_1155 - malto-oligosyltrehalose trehalohydrolase, at 1,172,794 to 1,174,581
_1155
EX28DRAFT_1156: EX28DRAFT_1156 - malto-oligosyltrehalose synthase, at 1,174,578 to 1,177,046
_1156
EX28DRAFT_1157: EX28DRAFT_1157 - glycogen debranching enzyme GlgX, at 1,177,062 to 1,179,137
_1157
Position (kb)
1174
1175
1176
1177
1178 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1173.625 kb on - strand, within EX28DRAFT_1155 at 1173.626 kb on + strand, within EX28DRAFT_1155 at 1173.626 kb on + strand, within EX28DRAFT_1155 at 1173.626 kb on + strand, within EX28DRAFT_1155 at 1173.627 kb on - strand, within EX28DRAFT_1155 at 1173.627 kb on - strand, within EX28DRAFT_1155 at 1173.808 kb on + strand, within EX28DRAFT_1155 at 1173.808 kb on + strand, within EX28DRAFT_1155 at 1173.812 kb on - strand, within EX28DRAFT_1155 at 1174.206 kb on + strand, within EX28DRAFT_1155 at 1174.543 kb on - strand at 1174.577 kb on + strand at 1174.653 kb on + strand at 1174.683 kb on + strand at 1174.684 kb on - strand at 1174.684 kb on - strand at 1174.806 kb on - strand at 1174.850 kb on + strand, within EX28DRAFT_1156 at 1174.850 kb on + strand, within EX28DRAFT_1156 at 1174.850 kb on + strand, within EX28DRAFT_1156 at 1174.851 kb on - strand, within EX28DRAFT_1156 at 1174.851 kb on - strand, within EX28DRAFT_1156 at 1174.851 kb on - strand, within EX28DRAFT_1156 at 1174.851 kb on - strand, within EX28DRAFT_1156 at 1174.851 kb on - strand, within EX28DRAFT_1156 at 1174.851 kb on - strand, within EX28DRAFT_1156 at 1175.049 kb on + strand, within EX28DRAFT_1156 at 1175.049 kb on + strand, within EX28DRAFT_1156 at 1175.052 kb on + strand, within EX28DRAFT_1156 at 1175.053 kb on - strand, within EX28DRAFT_1156 at 1175.085 kb on + strand, within EX28DRAFT_1156 at 1175.085 kb on + strand, within EX28DRAFT_1156 at 1175.370 kb on + strand, within EX28DRAFT_1156 at 1176.117 kb on + strand, within EX28DRAFT_1156 at 1176.303 kb on - strand, within EX28DRAFT_1156 at 1176.393 kb on + strand, within EX28DRAFT_1156 at 1176.414 kb on + strand, within EX28DRAFT_1156 at 1176.464 kb on + strand, within EX28DRAFT_1156 at 1176.559 kb on - strand, within EX28DRAFT_1156 at 1176.560 kb on - strand, within EX28DRAFT_1156 at 1176.578 kb on + strand, within EX28DRAFT_1156 at 1176.579 kb on - strand, within EX28DRAFT_1156 at 1176.579 kb on - strand, within EX28DRAFT_1156 at 1176.908 kb on + strand at 1177.021 kb on + strand at 1177.021 kb on + strand at 1177.074 kb on - strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.076 kb on + strand at 1177.077 kb on - strand at 1177.077 kb on - strand at 1177.118 kb on + strand at 1177.119 kb on - strand at 1177.119 kb on - strand at 1177.122 kb on + strand at 1177.123 kb on - strand at 1177.236 kb on + strand at 1177.236 kb on + strand at 1177.238 kb on + strand at 1177.239 kb on - strand at 1177.261 kb on - strand at 1177.291 kb on - strand, within EX28DRAFT_1157 at 1177.291 kb on - strand, within EX28DRAFT_1157 at 1177.368 kb on + strand, within EX28DRAFT_1157 at 1177.447 kb on + strand, within EX28DRAFT_1157 at 1177.447 kb on + strand, within EX28DRAFT_1157 at 1177.567 kb on - strand, within EX28DRAFT_1157 at 1177.666 kb on - strand, within EX28DRAFT_1157 at 1177.806 kb on + strand, within EX28DRAFT_1157 at 1177.807 kb on - strand, within EX28DRAFT_1157 at 1177.890 kb on + strand, within EX28DRAFT_1157 at 1177.891 kb on - strand, within EX28DRAFT_1157 at 1177.938 kb on - strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.953 kb on + strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.954 kb on - strand, within EX28DRAFT_1157 at 1177.960 kb on - strand, within EX28DRAFT_1157 at 1177.990 kb on - strand, within EX28DRAFT_1157 at 1178.018 kb on + strand, within EX28DRAFT_1157
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,173,625 - EX28DRAFT_1155 0.46 +0.2 1,173,626 + EX28DRAFT_1155 0.47 -0.1 1,173,626 + EX28DRAFT_1155 0.47 +0.3 1,173,626 + EX28DRAFT_1155 0.47 +0.0 1,173,627 - EX28DRAFT_1155 0.47 -0.6 1,173,627 - EX28DRAFT_1155 0.47 +0.9 1,173,808 + EX28DRAFT_1155 0.57 -0.9 1,173,808 + EX28DRAFT_1155 0.57 +0.4 1,173,812 - EX28DRAFT_1155 0.57 +0.2 1,174,206 + EX28DRAFT_1155 0.79 +0.3 1,174,543 - +0.1 1,174,577 + +0.2 1,174,653 + -0.3 1,174,683 + +0.6 1,174,684 - +0.7 1,174,684 - +0.2 1,174,806 - -0.8 1,174,850 + EX28DRAFT_1156 0.11 -1.5 1,174,850 + EX28DRAFT_1156 0.11 +0.6 1,174,850 + EX28DRAFT_1156 0.11 -0.4 1,174,851 - EX28DRAFT_1156 0.11 -0.3 1,174,851 - EX28DRAFT_1156 0.11 -0.6 1,174,851 - EX28DRAFT_1156 0.11 -1.5 1,174,851 - EX28DRAFT_1156 0.11 -1.0 1,174,851 - EX28DRAFT_1156 0.11 -0.6 1,174,851 - EX28DRAFT_1156 0.11 -0.4 1,175,049 + EX28DRAFT_1156 0.19 +0.4 1,175,049 + EX28DRAFT_1156 0.19 +0.3 1,175,052 + EX28DRAFT_1156 0.19 +0.1 1,175,053 - EX28DRAFT_1156 0.19 +0.0 1,175,085 + EX28DRAFT_1156 0.21 -0.4 1,175,085 + EX28DRAFT_1156 0.21 -0.1 1,175,370 + EX28DRAFT_1156 0.32 +0.1 1,176,117 + EX28DRAFT_1156 0.62 +0.2 1,176,303 - EX28DRAFT_1156 0.70 -0.3 1,176,393 + EX28DRAFT_1156 0.74 +0.1 1,176,414 + EX28DRAFT_1156 0.74 -0.4 1,176,464 + EX28DRAFT_1156 0.76 +0.2 1,176,559 - EX28DRAFT_1156 0.80 -0.1 1,176,560 - EX28DRAFT_1156 0.80 -0.3 1,176,578 + EX28DRAFT_1156 0.81 +1.2 1,176,579 - EX28DRAFT_1156 0.81 -0.2 1,176,579 - EX28DRAFT_1156 0.81 +1.1 1,176,908 + +0.5 1,177,021 + -0.3 1,177,021 + -0.3 1,177,074 - -0.4 1,177,076 + -0.6 1,177,076 + -0.3 1,177,076 + -0.1 1,177,076 + -3.3 1,177,076 + -0.6 1,177,076 + +0.1 1,177,076 + -0.7 1,177,076 + -1.6 1,177,077 - -0.3 1,177,077 - -0.1 1,177,118 + +0.3 1,177,119 - -0.4 1,177,119 - -0.0 1,177,122 + -0.7 1,177,123 - +0.0 1,177,236 + -0.1 1,177,236 + +0.5 1,177,238 + -0.1 1,177,239 - +0.2 1,177,261 - -0.2 1,177,291 - EX28DRAFT_1157 0.11 +0.2 1,177,291 - EX28DRAFT_1157 0.11 -0.4 1,177,368 + EX28DRAFT_1157 0.15 +0.3 1,177,447 + EX28DRAFT_1157 0.19 +0.3 1,177,447 + EX28DRAFT_1157 0.19 +0.2 1,177,567 - EX28DRAFT_1157 0.24 -0.7 1,177,666 - EX28DRAFT_1157 0.29 +0.2 1,177,806 + EX28DRAFT_1157 0.36 +0.3 1,177,807 - EX28DRAFT_1157 0.36 +0.2 1,177,890 + EX28DRAFT_1157 0.40 -0.1 1,177,891 - EX28DRAFT_1157 0.40 -0.9 1,177,938 - EX28DRAFT_1157 0.42 -0.5 1,177,953 + EX28DRAFT_1157 0.43 +1.9 1,177,953 + EX28DRAFT_1157 0.43 +0.5 1,177,953 + EX28DRAFT_1157 0.43 -0.1 1,177,953 + EX28DRAFT_1157 0.43 -0.5 1,177,954 - EX28DRAFT_1157 0.43 -0.1 1,177,954 - EX28DRAFT_1157 0.43 -0.8 1,177,954 - EX28DRAFT_1157 0.43 +0.6 1,177,954 - EX28DRAFT_1157 0.43 -0.5 1,177,954 - EX28DRAFT_1157 0.43 -2.2 1,177,960 - EX28DRAFT_1157 0.43 +0.0 1,177,990 - EX28DRAFT_1157 0.45 -1.3 1,178,018 + EX28DRAFT_1157 0.46 +0.2
Or see this region's nucleotide sequence