Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1103 and EX28DRAFT_1104 are separated by 176 nucleotides EX28DRAFT_1104 and EX28DRAFT_1105 are separated by 95 nucleotides EX28DRAFT_1105 and EX28DRAFT_1106 are separated by 232 nucleotides
EX28DRAFT_1103: EX28DRAFT_1103 - Malic enzyme, at 1,116,823 to 1,118,520
_1103
EX28DRAFT_1104: EX28DRAFT_1104 - 30S ribosomal protein subunit S22 family, at 1,118,697 to 1,118,834
_1104
EX28DRAFT_1105: EX28DRAFT_1105 - Putative biofilm-dependent modulation protein, at 1,118,930 to 1,119,145
_1105
EX28DRAFT_1106: EX28DRAFT_1106 - Zn-dependent hydrolases, including glyoxylases, at 1,119,378 to 1,120,229
_1106
Position (kb)
1118
1119
1120 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1117.955 kb on + strand, within EX28DRAFT_1103 at 1117.956 kb on - strand, within EX28DRAFT_1103 at 1118.050 kb on - strand, within EX28DRAFT_1103 at 1118.165 kb on + strand, within EX28DRAFT_1103 at 1118.166 kb on - strand, within EX28DRAFT_1103 at 1118.211 kb on - strand, within EX28DRAFT_1103 at 1118.255 kb on + strand, within EX28DRAFT_1103 at 1118.255 kb on + strand, within EX28DRAFT_1103 at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.486 kb on + strand at 1118.487 kb on - strand at 1118.487 kb on - strand at 1118.487 kb on - strand at 1118.489 kb on - strand at 1118.606 kb on + strand at 1118.609 kb on + strand at 1118.610 kb on - strand at 1118.610 kb on - strand at 1118.610 kb on - strand at 1118.628 kb on - strand at 1118.643 kb on + strand at 1118.686 kb on + strand at 1118.699 kb on - strand at 1118.771 kb on + strand, within EX28DRAFT_1104 at 1118.796 kb on - strand, within EX28DRAFT_1104 at 1118.837 kb on + strand at 1118.838 kb on - strand at 1118.857 kb on + strand at 1118.895 kb on - strand at 1118.895 kb on - strand at 1118.902 kb on + strand at 1118.921 kb on - strand at 1118.962 kb on - strand, within EX28DRAFT_1105 at 1118.962 kb on - strand, within EX28DRAFT_1105 at 1118.965 kb on + strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.966 kb on - strand, within EX28DRAFT_1105 at 1118.979 kb on + strand, within EX28DRAFT_1105 at 1118.979 kb on + strand, within EX28DRAFT_1105 at 1118.980 kb on - strand, within EX28DRAFT_1105 at 1119.121 kb on + strand, within EX28DRAFT_1105 at 1119.121 kb on + strand, within EX28DRAFT_1105 at 1119.122 kb on - strand, within EX28DRAFT_1105 at 1119.122 kb on - strand, within EX28DRAFT_1105 at 1119.140 kb on - strand at 1119.171 kb on - strand at 1119.414 kb on + strand at 1119.575 kb on - strand, within EX28DRAFT_1106 at 1119.748 kb on + strand, within EX28DRAFT_1106 at 1119.748 kb on + strand, within EX28DRAFT_1106 at 1119.749 kb on - strand, within EX28DRAFT_1106 at 1119.811 kb on - strand, within EX28DRAFT_1106 at 1119.896 kb on + strand, within EX28DRAFT_1106 at 1119.897 kb on - strand, within EX28DRAFT_1106 at 1119.970 kb on + strand, within EX28DRAFT_1106 at 1120.005 kb on - strand, within EX28DRAFT_1106
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,117,955 + EX28DRAFT_1103 0.67 +0.3 1,117,956 - EX28DRAFT_1103 0.67 +0.4 1,118,050 - EX28DRAFT_1103 0.72 -0.3 1,118,165 + EX28DRAFT_1103 0.79 -0.8 1,118,166 - EX28DRAFT_1103 0.79 +0.1 1,118,211 - EX28DRAFT_1103 0.82 +0.4 1,118,255 + EX28DRAFT_1103 0.84 -0.1 1,118,255 + EX28DRAFT_1103 0.84 +0.5 1,118,486 + -0.1 1,118,486 + -0.4 1,118,486 + +0.1 1,118,486 + -0.5 1,118,486 + -0.4 1,118,487 - +0.1 1,118,487 - -0.4 1,118,487 - -0.3 1,118,489 - -0.6 1,118,606 + -0.2 1,118,609 + -0.2 1,118,610 - +0.8 1,118,610 - +1.8 1,118,610 - -0.5 1,118,628 - -0.1 1,118,643 + +0.3 1,118,686 + -1.3 1,118,699 - -1.6 1,118,771 + EX28DRAFT_1104 0.54 +1.1 1,118,796 - EX28DRAFT_1104 0.72 -0.4 1,118,837 + +0.5 1,118,838 - +0.1 1,118,857 + +0.4 1,118,895 - +1.1 1,118,895 - -0.6 1,118,902 + -0.1 1,118,921 - -0.2 1,118,962 - EX28DRAFT_1105 0.15 -0.2 1,118,962 - EX28DRAFT_1105 0.15 -0.3 1,118,965 + EX28DRAFT_1105 0.16 -2.0 1,118,966 - EX28DRAFT_1105 0.17 -0.0 1,118,966 - EX28DRAFT_1105 0.17 -0.4 1,118,966 - EX28DRAFT_1105 0.17 +0.2 1,118,966 - EX28DRAFT_1105 0.17 -0.2 1,118,966 - EX28DRAFT_1105 0.17 -0.2 1,118,979 + EX28DRAFT_1105 0.23 +0.3 1,118,979 + EX28DRAFT_1105 0.23 +0.4 1,118,980 - EX28DRAFT_1105 0.23 -0.2 1,119,121 + EX28DRAFT_1105 0.88 -1.1 1,119,121 + EX28DRAFT_1105 0.88 -0.3 1,119,122 - EX28DRAFT_1105 0.89 -0.3 1,119,122 - EX28DRAFT_1105 0.89 -0.0 1,119,140 - -0.1 1,119,171 - +0.0 1,119,414 + +0.4 1,119,575 - EX28DRAFT_1106 0.23 +0.2 1,119,748 + EX28DRAFT_1106 0.43 +0.2 1,119,748 + EX28DRAFT_1106 0.43 +0.2 1,119,749 - EX28DRAFT_1106 0.44 -0.6 1,119,811 - EX28DRAFT_1106 0.51 -0.1 1,119,896 + EX28DRAFT_1106 0.61 -0.5 1,119,897 - EX28DRAFT_1106 0.61 -0.3 1,119,970 + EX28DRAFT_1106 0.69 -2.5 1,120,005 - EX28DRAFT_1106 0.74 +0.2
Or see this region's nucleotide sequence