Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0982

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0981 and EX28DRAFT_0982 are separated by 22 nucleotidesEX28DRAFT_0982 and EX28DRAFT_0983 overlap by 14 nucleotidesEX28DRAFT_0983 and EX28DRAFT_0984 are separated by 28 nucleotides EX28DRAFT_0981: EX28DRAFT_0981 - ABC-type sugar transport system, periplasmic component, at 982,057 to 983,349 _0981 EX28DRAFT_0982: EX28DRAFT_0982 - ABC-type sugar transport systems, permease components, at 983,372 to 984,253 _0982 EX28DRAFT_0983: EX28DRAFT_0983 - ABC-type sugar transport system, permease component, at 984,240 to 985,082 _0983 EX28DRAFT_0984: EX28DRAFT_0984 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 985,111 to 986,163 _0984 Position (kb) 983 984 985Strain fitness (log2 ratio) -2 -1 0 1at 982.407 kb on - strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.510 kb on + strand, within EX28DRAFT_0981at 982.759 kb on - strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.859 kb on - strand, within EX28DRAFT_0981at 983.130 kb on + strand, within EX28DRAFT_0981at 983.496 kb on + strand, within EX28DRAFT_0982at 983.545 kb on + strand, within EX28DRAFT_0982at 983.549 kb on + strand, within EX28DRAFT_0982at 983.549 kb on + strand, within EX28DRAFT_0982at 983.549 kb on + strand, within EX28DRAFT_0982at 983.550 kb on - strand, within EX28DRAFT_0982at 983.550 kb on - strand, within EX28DRAFT_0982at 983.717 kb on + strand, within EX28DRAFT_0982at 983.717 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.757 kb on - strand, within EX28DRAFT_0982at 983.790 kb on - strand, within EX28DRAFT_0982at 983.941 kb on + strand, within EX28DRAFT_0982at 984.068 kb on + strand, within EX28DRAFT_0982at 984.109 kb on + strand, within EX28DRAFT_0982at 984.109 kb on + strand, within EX28DRAFT_0982at 984.259 kb on + strandat 984.414 kb on + strand, within EX28DRAFT_0983at 984.414 kb on + strand, within EX28DRAFT_0983at 984.592 kb on - strand, within EX28DRAFT_0983at 984.592 kb on - strand, within EX28DRAFT_0983at 984.655 kb on - strand, within EX28DRAFT_0983at 984.655 kb on - strand, within EX28DRAFT_0983at 984.673 kb on + strand, within EX28DRAFT_0983at 984.673 kb on + strand, within EX28DRAFT_0983at 984.674 kb on - strand, within EX28DRAFT_0983at 984.729 kb on + strand, within EX28DRAFT_0983at 984.963 kb on + strand, within EX28DRAFT_0983at 984.965 kb on + strand, within EX28DRAFT_0983at 985.023 kb on + strandat 985.024 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
982,407 - EX28DRAFT_0981 0.27 -0.4
982,423 + EX28DRAFT_0981 0.28 -0.1
982,423 + EX28DRAFT_0981 0.28 +0.5
982,423 + EX28DRAFT_0981 0.28 -0.6
982,424 - EX28DRAFT_0981 0.28 -0.5
982,424 - EX28DRAFT_0981 0.28 -1.7
982,510 + EX28DRAFT_0981 0.35 -0.9
982,759 - EX28DRAFT_0981 0.54 -0.2
982,858 + EX28DRAFT_0981 0.62 +0.8
982,858 + EX28DRAFT_0981 0.62 -0.4
982,859 - EX28DRAFT_0981 0.62 -0.1
983,130 + EX28DRAFT_0981 0.83 -0.2
983,496 + EX28DRAFT_0982 0.14 +1.6
983,545 + EX28DRAFT_0982 0.20 -0.3
983,549 + EX28DRAFT_0982 0.20 -0.1
983,549 + EX28DRAFT_0982 0.20 -0.3
983,549 + EX28DRAFT_0982 0.20 -0.6
983,550 - EX28DRAFT_0982 0.20 -1.1
983,550 - EX28DRAFT_0982 0.20 -0.1
983,717 + EX28DRAFT_0982 0.39 +0.2
983,717 + EX28DRAFT_0982 0.39 +0.0
983,756 + EX28DRAFT_0982 0.44 -0.0
983,756 + EX28DRAFT_0982 0.44 -2.0
983,756 + EX28DRAFT_0982 0.44 -0.6
983,756 + EX28DRAFT_0982 0.44 -0.2
983,757 - EX28DRAFT_0982 0.44 +0.3
983,790 - EX28DRAFT_0982 0.47 -1.0
983,941 + EX28DRAFT_0982 0.65 -0.2
984,068 + EX28DRAFT_0982 0.79 -0.4
984,109 + EX28DRAFT_0982 0.84 +0.2
984,109 + EX28DRAFT_0982 0.84 -0.5
984,259 + +0.1
984,414 + EX28DRAFT_0983 0.21 +0.5
984,414 + EX28DRAFT_0983 0.21 +0.3
984,592 - EX28DRAFT_0983 0.42 -0.1
984,592 - EX28DRAFT_0983 0.42 +0.2
984,655 - EX28DRAFT_0983 0.49 +1.2
984,655 - EX28DRAFT_0983 0.49 -1.1
984,673 + EX28DRAFT_0983 0.51 -0.4
984,673 + EX28DRAFT_0983 0.51 -0.8
984,674 - EX28DRAFT_0983 0.51 +1.0
984,729 + EX28DRAFT_0983 0.58 -1.0
984,963 + EX28DRAFT_0983 0.86 +0.2
984,965 + EX28DRAFT_0983 0.86 +0.7
985,023 + +0.6
985,024 - -0.0

Or see this region's nucleotide sequence