Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0974 and EX28DRAFT_0975 are separated by 88 nucleotides EX28DRAFT_0975 and EX28DRAFT_0976 are separated by 166 nucleotides EX28DRAFT_0976 and EX28DRAFT_0977 are separated by 49 nucleotides
EX28DRAFT_0974: EX28DRAFT_0974 - ABC-type oligopeptide transport system, periplasmic component, at 975,736 to 977,376
_0974
EX28DRAFT_0975: EX28DRAFT_0975 - psp operon transcriptional activator PspF, at 977,465 to 978,442
_0975
EX28DRAFT_0976: EX28DRAFT_0976 - phage shock protein A (PspA) family protein, at 978,609 to 979,277
_0976
EX28DRAFT_0977: EX28DRAFT_0977 - phage shock protein B, at 979,327 to 979,551
_0977
Position (kb) 977
978
979 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 976.485 kb on - strand, within EX28DRAFT_0974 at 976.492 kb on - strand, within EX28DRAFT_0974 at 976.637 kb on - strand, within EX28DRAFT_0974 at 976.966 kb on - strand, within EX28DRAFT_0974 at 977.508 kb on + strand at 977.546 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.609 kb on + strand, within EX28DRAFT_0975 at 978.066 kb on + strand, within EX28DRAFT_0975 at 978.262 kb on + strand, within EX28DRAFT_0975 at 978.263 kb on - strand, within EX28DRAFT_0975 at 978.291 kb on + strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.595 kb on - strand at 978.743 kb on + strand, within EX28DRAFT_0976 at 978.854 kb on + strand, within EX28DRAFT_0976 at 979.130 kb on + strand, within EX28DRAFT_0976 at 979.278 kb on + strand at 979.278 kb on + strand at 979.310 kb on + strand at 979.310 kb on + strand at 979.311 kb on - strand at 979.322 kb on + strand at 979.402 kb on + strand, within EX28DRAFT_0977
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 976,485 - EX28DRAFT_0974 0.46 +0.9 976,492 - EX28DRAFT_0974 0.46 -0.2 976,637 - EX28DRAFT_0974 0.55 -0.2 976,966 - EX28DRAFT_0974 0.75 -1.0 977,508 + -1.3 977,546 - +0.0 977,548 - +0.3 977,548 - +1.5 977,548 - -4.1 977,609 + EX28DRAFT_0975 0.15 -0.1 978,066 + EX28DRAFT_0975 0.61 +0.0 978,262 + EX28DRAFT_0975 0.81 +0.1 978,263 - EX28DRAFT_0975 0.82 +0.0 978,291 + EX28DRAFT_0975 0.84 -0.8 978,292 - EX28DRAFT_0975 0.85 +0.4 978,292 - EX28DRAFT_0975 0.85 -0.2 978,595 - +0.2 978,743 + EX28DRAFT_0976 0.20 +0.1 978,854 + EX28DRAFT_0976 0.37 +0.8 979,130 + EX28DRAFT_0976 0.78 +0.3 979,278 + -0.3 979,278 + +0.2 979,310 + -0.2 979,310 + -1.6 979,311 - +0.6 979,322 + +1.3 979,402 + EX28DRAFT_0977 0.33 +0.0
Or see this region's nucleotide sequence