Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0931 and EX28DRAFT_0932 are separated by 133 nucleotides EX28DRAFT_0932 and EX28DRAFT_0933 overlap by 1 nucleotides
EX28DRAFT_0931: EX28DRAFT_0931 - Response regulator, at 929,913 to 930,548
_0931
EX28DRAFT_0932: EX28DRAFT_0932 - tryptophan synthase, alpha chain (EC 4.2.1.20), at 930,682 to 931,491
_0932
EX28DRAFT_0933: EX28DRAFT_0933 - tryptophan synthase, beta subunit, at 931,491 to 932,684
_0933
Position (kb) 930
931
932 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 929.709 kb on - strand at 929.709 kb on - strand at 929.811 kb on + strand at 929.827 kb on + strand at 929.878 kb on + strand at 929.883 kb on - strand at 929.955 kb on - strand at 929.962 kb on - strand at 930.061 kb on + strand, within EX28DRAFT_0931 at 930.062 kb on - strand, within EX28DRAFT_0931 at 930.062 kb on - strand, within EX28DRAFT_0931 at 930.064 kb on + strand, within EX28DRAFT_0931 at 930.107 kb on - strand, within EX28DRAFT_0931 at 930.181 kb on + strand, within EX28DRAFT_0931 at 930.242 kb on + strand, within EX28DRAFT_0931 at 930.455 kb on + strand, within EX28DRAFT_0931 at 930.505 kb on + strand at 930.546 kb on + strand at 930.546 kb on + strand at 930.556 kb on + strand at 930.598 kb on + strand at 930.598 kb on + strand at 930.603 kb on - strand at 930.603 kb on - strand at 930.684 kb on - strand at 930.968 kb on + strand, within EX28DRAFT_0932 at 930.969 kb on - strand, within EX28DRAFT_0932 at 930.972 kb on + strand, within EX28DRAFT_0932 at 930.973 kb on - strand, within EX28DRAFT_0932 at 930.975 kb on - strand, within EX28DRAFT_0932 at 931.149 kb on - strand, within EX28DRAFT_0932 at 931.149 kb on - strand, within EX28DRAFT_0932 at 931.161 kb on + strand, within EX28DRAFT_0932 at 931.471 kb on + strand at 931.472 kb on - strand at 931.472 kb on - strand at 931.535 kb on + strand at 931.536 kb on - strand at 931.714 kb on + strand, within EX28DRAFT_0933 at 931.715 kb on - strand, within EX28DRAFT_0933 at 931.792 kb on + strand, within EX28DRAFT_0933 at 931.792 kb on + strand, within EX28DRAFT_0933 at 931.793 kb on - strand, within EX28DRAFT_0933 at 931.849 kb on + strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.143 kb on + strand, within EX28DRAFT_0933 at 932.143 kb on + strand, within EX28DRAFT_0933 at 932.144 kb on - strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.288 kb on - strand, within EX28DRAFT_0933 at 932.427 kb on - strand, within EX28DRAFT_0933 at 932.464 kb on + strand, within EX28DRAFT_0933
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 929,709 - -1.0 929,709 - +0.1 929,811 + +0.5 929,827 + +0.4 929,878 + -0.1 929,883 - -1.2 929,955 - -1.6 929,962 - -0.2 930,061 + EX28DRAFT_0931 0.23 -0.4 930,062 - EX28DRAFT_0931 0.23 -0.5 930,062 - EX28DRAFT_0931 0.23 -0.2 930,064 + EX28DRAFT_0931 0.24 -0.1 930,107 - EX28DRAFT_0931 0.31 +0.5 930,181 + EX28DRAFT_0931 0.42 +0.1 930,242 + EX28DRAFT_0931 0.52 -0.2 930,455 + EX28DRAFT_0931 0.85 -0.4 930,505 + +0.3 930,546 + -0.7 930,546 + +0.9 930,556 + -2.5 930,598 + +0.1 930,598 + +0.0 930,603 - +0.1 930,603 - -0.4 930,684 - +0.9 930,968 + EX28DRAFT_0932 0.35 -1.3 930,969 - EX28DRAFT_0932 0.35 -1.5 930,972 + EX28DRAFT_0932 0.36 +1.5 930,973 - EX28DRAFT_0932 0.36 -4.9 930,975 - EX28DRAFT_0932 0.36 -2.5 931,149 - EX28DRAFT_0932 0.58 -2.9 931,149 - EX28DRAFT_0932 0.58 -1.8 931,161 + EX28DRAFT_0932 0.59 -3.6 931,471 + -0.8 931,472 - -1.7 931,472 - -4.1 931,535 + -3.4 931,536 - -3.4 931,714 + EX28DRAFT_0933 0.19 -3.2 931,715 - EX28DRAFT_0933 0.19 -3.6 931,792 + EX28DRAFT_0933 0.25 -2.2 931,792 + EX28DRAFT_0933 0.25 -3.5 931,793 - EX28DRAFT_0933 0.25 -3.3 931,849 + EX28DRAFT_0933 0.30 -3.5 932,127 - EX28DRAFT_0933 0.53 -3.6 932,127 - EX28DRAFT_0933 0.53 -1.9 932,127 - EX28DRAFT_0933 0.53 -3.3 932,128 + EX28DRAFT_0933 0.53 -3.8 932,128 + EX28DRAFT_0933 0.53 -3.5 932,128 + EX28DRAFT_0933 0.53 -4.3 932,129 - EX28DRAFT_0933 0.53 -1.3 932,129 - EX28DRAFT_0933 0.53 -4.2 932,129 - EX28DRAFT_0933 0.53 -4.8 932,129 - EX28DRAFT_0933 0.53 -3.2 932,129 - EX28DRAFT_0933 0.53 -2.4 932,129 - EX28DRAFT_0933 0.53 -2.8 932,143 + EX28DRAFT_0933 0.55 -3.2 932,143 + EX28DRAFT_0933 0.55 -2.9 932,144 - EX28DRAFT_0933 0.55 -4.1 932,287 + EX28DRAFT_0933 0.67 -2.7 932,287 + EX28DRAFT_0933 0.67 -3.4 932,287 + EX28DRAFT_0933 0.67 -3.8 932,288 - EX28DRAFT_0933 0.67 -4.9 932,427 - EX28DRAFT_0933 0.78 -4.6 932,464 + EX28DRAFT_0933 0.81 -2.0
Or see this region's nucleotide sequence