Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0847 and EX28DRAFT_0848 are separated by 3 nucleotides EX28DRAFT_0848 and EX28DRAFT_0849 overlap by 8 nucleotides
EX28DRAFT_0847: EX28DRAFT_0847 - Protein of unknown function (DUF3442), at 854,865 to 856,271
_0847
EX28DRAFT_0848: EX28DRAFT_0848 - two component transcriptional regulator, LuxR family, at 856,275 to 856,925
_0848
EX28DRAFT_0849: EX28DRAFT_0849 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 856,918 to 858,714
_0849
Position (kb) 856
857 Strain fitness (log2 ratio) -1
0
1
2 at 855.400 kb on - strand, within EX28DRAFT_0847 at 855.483 kb on + strand, within EX28DRAFT_0847 at 855.483 kb on + strand, within EX28DRAFT_0847 at 855.484 kb on - strand, within EX28DRAFT_0847 at 855.484 kb on - strand, within EX28DRAFT_0847 at 855.484 kb on - strand, within EX28DRAFT_0847 at 855.537 kb on - strand, within EX28DRAFT_0847 at 855.618 kb on + strand, within EX28DRAFT_0847 at 855.618 kb on + strand, within EX28DRAFT_0847 at 855.696 kb on + strand, within EX28DRAFT_0847 at 855.696 kb on + strand, within EX28DRAFT_0847 at 855.696 kb on + strand, within EX28DRAFT_0847 at 855.697 kb on - strand, within EX28DRAFT_0847 at 855.697 kb on - strand, within EX28DRAFT_0847 at 855.697 kb on - strand, within EX28DRAFT_0847 at 855.765 kb on - strand, within EX28DRAFT_0847 at 855.765 kb on - strand, within EX28DRAFT_0847 at 855.974 kb on + strand, within EX28DRAFT_0847 at 856.225 kb on + strand at 856.226 kb on - strand at 856.269 kb on + strand at 856.270 kb on - strand at 856.270 kb on - strand at 856.346 kb on + strand, within EX28DRAFT_0848 at 856.347 kb on - strand, within EX28DRAFT_0848 at 856.347 kb on - strand, within EX28DRAFT_0848 at 856.743 kb on - strand, within EX28DRAFT_0848 at 856.948 kb on - strand at 856.965 kb on + strand at 856.965 kb on + strand at 857.052 kb on + strand at 857.053 kb on - strand at 857.218 kb on + strand, within EX28DRAFT_0849 at 857.218 kb on + strand, within EX28DRAFT_0849 at 857.219 kb on - strand, within EX28DRAFT_0849 at 857.224 kb on + strand, within EX28DRAFT_0849 at 857.224 kb on + strand, within EX28DRAFT_0849 at 857.224 kb on + strand, within EX28DRAFT_0849 at 857.225 kb on - strand, within EX28DRAFT_0849 at 857.225 kb on - strand, within EX28DRAFT_0849 at 857.225 kb on - strand, within EX28DRAFT_0849 at 857.298 kb on + strand, within EX28DRAFT_0849 at 857.688 kb on + strand, within EX28DRAFT_0849
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 855,400 - EX28DRAFT_0847 0.38 -0.1 855,483 + EX28DRAFT_0847 0.44 +0.0 855,483 + EX28DRAFT_0847 0.44 -0.4 855,484 - EX28DRAFT_0847 0.44 -0.1 855,484 - EX28DRAFT_0847 0.44 -0.2 855,484 - EX28DRAFT_0847 0.44 -0.1 855,537 - EX28DRAFT_0847 0.48 -0.8 855,618 + EX28DRAFT_0847 0.54 +0.2 855,618 + EX28DRAFT_0847 0.54 -0.5 855,696 + EX28DRAFT_0847 0.59 +0.4 855,696 + EX28DRAFT_0847 0.59 +0.0 855,696 + EX28DRAFT_0847 0.59 -0.2 855,697 - EX28DRAFT_0847 0.59 -0.2 855,697 - EX28DRAFT_0847 0.59 +0.4 855,697 - EX28DRAFT_0847 0.59 +0.7 855,765 - EX28DRAFT_0847 0.64 -0.7 855,765 - EX28DRAFT_0847 0.64 -0.1 855,974 + EX28DRAFT_0847 0.79 +0.1 856,225 + -1.1 856,226 - -0.9 856,269 + +0.4 856,270 - +0.7 856,270 - -1.0 856,346 + EX28DRAFT_0848 0.11 +0.4 856,347 - EX28DRAFT_0848 0.11 +0.9 856,347 - EX28DRAFT_0848 0.11 +0.3 856,743 - EX28DRAFT_0848 0.72 +0.0 856,948 - -0.0 856,965 + -0.3 856,965 + +1.6 857,052 + +1.2 857,053 - +0.1 857,218 + EX28DRAFT_0849 0.17 +1.9 857,218 + EX28DRAFT_0849 0.17 -0.3 857,219 - EX28DRAFT_0849 0.17 -0.8 857,224 + EX28DRAFT_0849 0.17 -0.8 857,224 + EX28DRAFT_0849 0.17 +1.0 857,224 + EX28DRAFT_0849 0.17 +0.5 857,225 - EX28DRAFT_0849 0.17 +0.6 857,225 - EX28DRAFT_0849 0.17 -1.0 857,225 - EX28DRAFT_0849 0.17 +0.1 857,298 + EX28DRAFT_0849 0.21 +0.9 857,688 + EX28DRAFT_0849 0.43 +1.3
Or see this region's nucleotide sequence