Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0794

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0792 and EX28DRAFT_0793 are separated by 75 nucleotidesEX28DRAFT_0793 and EX28DRAFT_0794 are separated by 3 nucleotidesEX28DRAFT_0794 and EX28DRAFT_0795 are separated by 54 nucleotidesEX28DRAFT_0795 and EX28DRAFT_0796 are separated by 50 nucleotidesEX28DRAFT_0796 and EX28DRAFT_0797 are separated by 179 nucleotides EX28DRAFT_0792: EX28DRAFT_0792 - type VI secretion-associated protein, ImpA family, at 793,967 to 794,983 _0792 EX28DRAFT_0793: EX28DRAFT_0793 - type VI secretion protein, VC_A0107 family, at 795,059 to 795,583 _0793 EX28DRAFT_0794: EX28DRAFT_0794 - type VI secretion protein, EvpB/VC_A0108 family, at 795,587 to 797,086 _0794 EX28DRAFT_0795: EX28DRAFT_0795 - hypothetical protein, at 797,141 to 797,374 _0795 EX28DRAFT_0796: EX28DRAFT_0796 - hypothetical protein, at 797,425 to 797,844 _0796 EX28DRAFT_0797: EX28DRAFT_0797 - Hemolysin-coregulated protein (uncharacterized), at 798,024 to 798,506 _0797 Position (kb) 795 796 797 798Strain fitness (log2 ratio) -2 -1 0 1 2at 794.670 kb on + strand, within EX28DRAFT_0792at 794.834 kb on + strand, within EX28DRAFT_0792at 794.835 kb on - strand, within EX28DRAFT_0792at 794.846 kb on + strand, within EX28DRAFT_0792at 794.905 kb on + strandat 794.906 kb on - strandat 795.097 kb on + strandat 795.098 kb on - strandat 795.098 kb on - strandat 795.133 kb on - strand, within EX28DRAFT_0793at 795.140 kb on + strand, within EX28DRAFT_0793at 795.140 kb on + strand, within EX28DRAFT_0793at 795.141 kb on - strand, within EX28DRAFT_0793at 795.141 kb on - strand, within EX28DRAFT_0793at 795.141 kb on - strand, within EX28DRAFT_0793at 795.155 kb on - strand, within EX28DRAFT_0793at 795.238 kb on + strand, within EX28DRAFT_0793at 795.337 kb on + strand, within EX28DRAFT_0793at 795.337 kb on + strand, within EX28DRAFT_0793at 795.338 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.462 kb on - strand, within EX28DRAFT_0793at 795.572 kb on - strandat 795.582 kb on - strandat 795.582 kb on - strandat 795.770 kb on - strand, within EX28DRAFT_0794at 795.773 kb on + strand, within EX28DRAFT_0794at 795.773 kb on + strand, within EX28DRAFT_0794at 795.938 kb on - strand, within EX28DRAFT_0794at 795.938 kb on - strand, within EX28DRAFT_0794at 796.025 kb on + strand, within EX28DRAFT_0794at 796.038 kb on - strand, within EX28DRAFT_0794at 796.038 kb on - strand, within EX28DRAFT_0794at 796.082 kb on + strand, within EX28DRAFT_0794at 796.086 kb on - strand, within EX28DRAFT_0794at 796.412 kb on + strand, within EX28DRAFT_0794at 796.412 kb on + strand, within EX28DRAFT_0794at 796.412 kb on + strand, within EX28DRAFT_0794at 796.433 kb on + strand, within EX28DRAFT_0794at 796.633 kb on + strand, within EX28DRAFT_0794at 796.709 kb on + strand, within EX28DRAFT_0794at 796.877 kb on + strand, within EX28DRAFT_0794at 796.878 kb on - strand, within EX28DRAFT_0794at 796.980 kb on - strandat 797.054 kb on - strandat 797.094 kb on - strandat 797.115 kb on - strandat 797.135 kb on + strandat 797.136 kb on - strandat 797.195 kb on + strand, within EX28DRAFT_0795at 797.195 kb on + strand, within EX28DRAFT_0795at 797.197 kb on + strand, within EX28DRAFT_0795at 797.198 kb on - strand, within EX28DRAFT_0795at 797.198 kb on - strand, within EX28DRAFT_0795at 797.206 kb on - strand, within EX28DRAFT_0795at 797.208 kb on + strand, within EX28DRAFT_0795at 797.246 kb on + strand, within EX28DRAFT_0795at 797.247 kb on - strand, within EX28DRAFT_0795at 797.305 kb on - strand, within EX28DRAFT_0795at 797.318 kb on - strand, within EX28DRAFT_0795at 797.339 kb on + strand, within EX28DRAFT_0795at 797.340 kb on - strand, within EX28DRAFT_0795at 797.450 kb on + strandat 797.450 kb on + strandat 797.451 kb on - strandat 797.465 kb on - strandat 797.482 kb on - strand, within EX28DRAFT_0796at 797.485 kb on + strand, within EX28DRAFT_0796at 797.532 kb on + strand, within EX28DRAFT_0796at 797.562 kb on - strand, within EX28DRAFT_0796at 797.655 kb on + strand, within EX28DRAFT_0796at 797.656 kb on - strand, within EX28DRAFT_0796at 797.759 kb on - strand, within EX28DRAFT_0796at 797.759 kb on - strand, within EX28DRAFT_0796at 797.802 kb on - strand, within EX28DRAFT_0796at 797.842 kb on + strandat 797.884 kb on + strandat 797.933 kb on - strandat 797.933 kb on - strandat 797.974 kb on - strandat 797.975 kb on + strandat 797.975 kb on + strandat 797.996 kb on + strandat 798.017 kb on - strandat 798.020 kb on + strandat 798.021 kb on - strandat 798.024 kb on - strandat 798.035 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
794,670 + EX28DRAFT_0792 0.69 -0.4
794,834 + EX28DRAFT_0792 0.85 +1.4
794,835 - EX28DRAFT_0792 0.85 +0.8
794,846 + EX28DRAFT_0792 0.86 -0.6
794,905 + -0.1
794,906 - +0.5
795,097 + -2.2
795,098 - +1.4
795,098 - +0.6
795,133 - EX28DRAFT_0793 0.14 +0.4
795,140 + EX28DRAFT_0793 0.15 +0.3
795,140 + EX28DRAFT_0793 0.15 -0.1
795,141 - EX28DRAFT_0793 0.16 +0.1
795,141 - EX28DRAFT_0793 0.16 +0.6
795,141 - EX28DRAFT_0793 0.16 +2.4
795,155 - EX28DRAFT_0793 0.18 +0.5
795,238 + EX28DRAFT_0793 0.34 +0.0
795,337 + EX28DRAFT_0793 0.53 -0.6
795,337 + EX28DRAFT_0793 0.53 +0.6
795,338 - EX28DRAFT_0793 0.53 +1.6
795,462 - EX28DRAFT_0793 0.77 +0.9
795,462 - EX28DRAFT_0793 0.77 +0.2
795,462 - EX28DRAFT_0793 0.77 +1.1
795,462 - EX28DRAFT_0793 0.77 +0.1
795,462 - EX28DRAFT_0793 0.77 -0.4
795,572 - +0.1
795,582 - +0.3
795,582 - +1.3
795,770 - EX28DRAFT_0794 0.12 -0.1
795,773 + EX28DRAFT_0794 0.12 -0.4
795,773 + EX28DRAFT_0794 0.12 +0.3
795,938 - EX28DRAFT_0794 0.23 +0.6
795,938 - EX28DRAFT_0794 0.23 +1.2
796,025 + EX28DRAFT_0794 0.29 +0.2
796,038 - EX28DRAFT_0794 0.30 +0.1
796,038 - EX28DRAFT_0794 0.30 -0.2
796,082 + EX28DRAFT_0794 0.33 -0.8
796,086 - EX28DRAFT_0794 0.33 +0.5
796,412 + EX28DRAFT_0794 0.55 +0.3
796,412 + EX28DRAFT_0794 0.55 +0.4
796,412 + EX28DRAFT_0794 0.55 +2.3
796,433 + EX28DRAFT_0794 0.56 -0.7
796,633 + EX28DRAFT_0794 0.70 +0.3
796,709 + EX28DRAFT_0794 0.75 +0.0
796,877 + EX28DRAFT_0794 0.86 +0.3
796,878 - EX28DRAFT_0794 0.86 +0.4
796,980 - +1.2
797,054 - +0.5
797,094 - +0.7
797,115 - +0.8
797,135 + -0.1
797,136 - +0.5
797,195 + EX28DRAFT_0795 0.23 +0.0
797,195 + EX28DRAFT_0795 0.23 -0.2
797,197 + EX28DRAFT_0795 0.24 -0.9
797,198 - EX28DRAFT_0795 0.24 +0.3
797,198 - EX28DRAFT_0795 0.24 -0.4
797,206 - EX28DRAFT_0795 0.28 +1.9
797,208 + EX28DRAFT_0795 0.29 +1.7
797,246 + EX28DRAFT_0795 0.45 -0.1
797,247 - EX28DRAFT_0795 0.45 +0.3
797,305 - EX28DRAFT_0795 0.70 +0.4
797,318 - EX28DRAFT_0795 0.76 +0.2
797,339 + EX28DRAFT_0795 0.85 +0.7
797,340 - EX28DRAFT_0795 0.85 +0.4
797,450 + +0.1
797,450 + -0.1
797,451 - +0.3
797,465 - +0.3
797,482 - EX28DRAFT_0796 0.14 +1.5
797,485 + EX28DRAFT_0796 0.14 +0.4
797,532 + EX28DRAFT_0796 0.25 -1.2
797,562 - EX28DRAFT_0796 0.33 +0.3
797,655 + EX28DRAFT_0796 0.55 +0.0
797,656 - EX28DRAFT_0796 0.55 -0.7
797,759 - EX28DRAFT_0796 0.80 -0.4
797,759 - EX28DRAFT_0796 0.80 -0.1
797,802 - EX28DRAFT_0796 0.90 -0.1
797,842 + -0.2
797,884 + -0.8
797,933 - +0.5
797,933 - +0.9
797,974 - +1.0
797,975 + -0.6
797,975 + -0.7
797,996 + -0.2
798,017 - +0.7
798,020 + +0.2
798,021 - +0.6
798,024 - +1.0
798,035 + +0.1

Or see this region's nucleotide sequence