Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0738 and EX28DRAFT_0739 are separated by 398 nucleotides EX28DRAFT_0739 and EX28DRAFT_0740 are separated by 54 nucleotides EX28DRAFT_0740 and EX28DRAFT_0741 are separated by 12 nucleotides EX28DRAFT_0741 and EX28DRAFT_0742 are separated by 46 nucleotides
EX28DRAFT_0738: EX28DRAFT_0738 - Predicted membrane protein, at 735,391 to 735,957
_0738
EX28DRAFT_0739: EX28DRAFT_0739 - Predicted membrane protein, at 736,356 to 736,814
_0739
EX28DRAFT_0740: EX28DRAFT_0740 - PTS system, mannose/fructose/sorbose family, IID component, at 736,869 to 737,720
_0740
EX28DRAFT_0741: EX28DRAFT_0741 - PTS system, mannose/fructose/sorbose family, IIC component, at 737,733 to 738,533
_0741
EX28DRAFT_0742: EX28DRAFT_0742 - PTS system, mannose/fructose/sorbose family, IIB component, at 738,580 to 739,545
_0742
Position (kb) 736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.984 kb on + strand at 735.985 kb on - strand at 736.022 kb on + strand at 736.026 kb on + strand at 736.027 kb on - strand at 736.027 kb on - strand at 736.053 kb on + strand at 736.054 kb on - strand at 736.054 kb on - strand at 736.169 kb on - strand at 736.532 kb on + strand, within EX28DRAFT_0739 at 736.593 kb on + strand, within EX28DRAFT_0739 at 736.593 kb on + strand, within EX28DRAFT_0739 at 736.611 kb on + strand, within EX28DRAFT_0739 at 736.639 kb on + strand, within EX28DRAFT_0739 at 736.649 kb on + strand, within EX28DRAFT_0739 at 736.753 kb on + strand, within EX28DRAFT_0739 at 736.794 kb on + strand at 736.858 kb on - strand at 736.870 kb on + strand at 736.870 kb on + strand at 736.871 kb on - strand at 737.231 kb on - strand, within EX28DRAFT_0740 at 737.231 kb on - strand, within EX28DRAFT_0740 at 737.491 kb on + strand, within EX28DRAFT_0740 at 737.491 kb on + strand, within EX28DRAFT_0740 at 737.492 kb on - strand, within EX28DRAFT_0740 at 737.492 kb on - strand, within EX28DRAFT_0740 at 737.612 kb on + strand, within EX28DRAFT_0740 at 737.646 kb on - strand at 737.646 kb on - strand at 737.712 kb on - strand at 737.801 kb on - strand at 737.821 kb on + strand, within EX28DRAFT_0741 at 737.902 kb on + strand, within EX28DRAFT_0741 at 737.903 kb on - strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.964 kb on + strand, within EX28DRAFT_0741 at 737.965 kb on - strand, within EX28DRAFT_0741 at 738.045 kb on - strand, within EX28DRAFT_0741 at 738.111 kb on + strand, within EX28DRAFT_0741 at 738.112 kb on - strand, within EX28DRAFT_0741 at 738.112 kb on - strand, within EX28DRAFT_0741 at 738.186 kb on - strand, within EX28DRAFT_0741 at 738.192 kb on - strand, within EX28DRAFT_0741 at 738.425 kb on + strand, within EX28DRAFT_0741 at 738.485 kb on + strand at 738.486 kb on - strand at 738.524 kb on + strand at 738.546 kb on - strand at 738.548 kb on + strand at 738.548 kb on + strand at 738.549 kb on - strand at 738.549 kb on - strand at 738.549 kb on - strand at 738.559 kb on + strand at 738.559 kb on + strand at 738.559 kb on + strand at 738.560 kb on - strand at 738.560 kb on - strand at 738.562 kb on - strand at 738.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 735,984 + -2.9 735,985 - -2.3 736,022 + -2.2 736,026 + -1.5 736,027 - -0.5 736,027 - -0.4 736,053 + -0.4 736,054 - -0.8 736,054 - -1.1 736,169 - -1.6 736,532 + EX28DRAFT_0739 0.38 -0.2 736,593 + EX28DRAFT_0739 0.52 -0.1 736,593 + EX28DRAFT_0739 0.52 +0.4 736,611 + EX28DRAFT_0739 0.56 -0.1 736,639 + EX28DRAFT_0739 0.62 +1.8 736,649 + EX28DRAFT_0739 0.64 -0.3 736,753 + EX28DRAFT_0739 0.86 -0.7 736,794 + -0.2 736,858 - -0.5 736,870 + -0.2 736,870 + +0.2 736,871 - +0.4 737,231 - EX28DRAFT_0740 0.42 -1.7 737,231 - EX28DRAFT_0740 0.42 +0.1 737,491 + EX28DRAFT_0740 0.73 +2.0 737,491 + EX28DRAFT_0740 0.73 +0.4 737,492 - EX28DRAFT_0740 0.73 +0.2 737,492 - EX28DRAFT_0740 0.73 +0.5 737,612 + EX28DRAFT_0740 0.87 +0.4 737,646 - +0.2 737,646 - -0.1 737,712 - -0.6 737,801 - +0.7 737,821 + EX28DRAFT_0741 0.11 +0.5 737,902 + EX28DRAFT_0741 0.21 -1.4 737,903 - EX28DRAFT_0741 0.21 +0.2 737,964 + EX28DRAFT_0741 0.29 +0.5 737,964 + EX28DRAFT_0741 0.29 +0.3 737,964 + EX28DRAFT_0741 0.29 +0.1 737,965 - EX28DRAFT_0741 0.29 +0.4 738,045 - EX28DRAFT_0741 0.39 +0.4 738,111 + EX28DRAFT_0741 0.47 -0.2 738,112 - EX28DRAFT_0741 0.47 +0.7 738,112 - EX28DRAFT_0741 0.47 +0.5 738,186 - EX28DRAFT_0741 0.57 +0.4 738,192 - EX28DRAFT_0741 0.57 +0.7 738,425 + EX28DRAFT_0741 0.86 +0.6 738,485 + -1.3 738,486 - -0.1 738,524 + +0.2 738,546 - -0.6 738,548 + +0.1 738,548 + +0.0 738,549 - +0.5 738,549 - +0.7 738,549 - -0.2 738,559 + +0.0 738,559 + +0.5 738,559 + -0.1 738,560 - +0.1 738,560 - +0.5 738,562 - -1.5 738,581 + +1.3
Or see this region's nucleotide sequence