Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0718

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0717 and EX28DRAFT_0718 are separated by 173 nucleotidesEX28DRAFT_0718 and EX28DRAFT_0719 are separated by 166 nucleotidesEX28DRAFT_0719 and EX28DRAFT_0720 are separated by 34 nucleotides EX28DRAFT_0717: EX28DRAFT_0717 - Glycosyltransferase family 17, at 714,132 to 715,028 _0717 EX28DRAFT_0718: EX28DRAFT_0718 - Uncharacterized protein conserved in bacteria, at 715,202 to 716,143 _0718 EX28DRAFT_0719: EX28DRAFT_0719 - Calcineurin-like phosphoesterase, at 716,310 to 716,954 _0719 EX28DRAFT_0720: EX28DRAFT_0720 - Protein of unknown function (DUF1480), at 716,989 to 717,228 _0720 Position (kb) 715 716 717Strain fitness (log2 ratio) -1 0 1 2at 714.313 kb on - strand, within EX28DRAFT_0717at 714.555 kb on - strand, within EX28DRAFT_0717at 714.555 kb on - strand, within EX28DRAFT_0717at 714.847 kb on + strand, within EX28DRAFT_0717at 714.848 kb on - strand, within EX28DRAFT_0717at 714.848 kb on - strand, within EX28DRAFT_0717at 714.852 kb on - strand, within EX28DRAFT_0717at 714.875 kb on - strand, within EX28DRAFT_0717at 714.882 kb on - strand, within EX28DRAFT_0717at 714.992 kb on + strandat 714.992 kb on + strandat 714.992 kb on + strandat 715.007 kb on - strandat 715.008 kb on + strandat 715.009 kb on - strandat 715.009 kb on - strandat 715.009 kb on - strandat 715.022 kb on - strandat 715.022 kb on - strandat 715.129 kb on + strandat 715.216 kb on + strandat 715.230 kb on - strandat 715.377 kb on + strand, within EX28DRAFT_0718at 715.737 kb on + strand, within EX28DRAFT_0718at 715.743 kb on - strand, within EX28DRAFT_0718at 715.921 kb on + strand, within EX28DRAFT_0718at 716.013 kb on - strand, within EX28DRAFT_0718at 716.092 kb on + strandat 716.093 kb on - strandat 716.093 kb on - strandat 716.093 kb on - strandat 716.137 kb on + strandat 716.138 kb on - strandat 716.164 kb on - strandat 716.172 kb on - strandat 716.176 kb on + strandat 716.188 kb on - strandat 716.198 kb on + strandat 716.201 kb on + strandat 716.290 kb on + strandat 716.290 kb on + strandat 716.291 kb on - strandat 716.309 kb on + strandat 716.309 kb on + strandat 716.310 kb on - strandat 716.314 kb on - strandat 716.314 kb on - strandat 716.365 kb on + strandat 716.414 kb on + strand, within EX28DRAFT_0719at 716.431 kb on + strand, within EX28DRAFT_0719at 716.432 kb on - strand, within EX28DRAFT_0719at 716.477 kb on + strand, within EX28DRAFT_0719at 716.491 kb on + strand, within EX28DRAFT_0719at 716.672 kb on + strand, within EX28DRAFT_0719at 716.804 kb on - strand, within EX28DRAFT_0719at 716.858 kb on + strand, within EX28DRAFT_0719at 716.858 kb on + strand, within EX28DRAFT_0719at 716.886 kb on - strand, within EX28DRAFT_0719at 716.886 kb on - strand, within EX28DRAFT_0719at 716.898 kb on + strandat 716.899 kb on - strandat 716.906 kb on + strandat 716.928 kb on + strandat 716.928 kb on + strandat 716.953 kb on - strandat 716.955 kb on + strandat 716.955 kb on + strandat 716.985 kb on + strandat 716.985 kb on + strandat 717.022 kb on - strand, within EX28DRAFT_0720at 717.029 kb on + strand, within EX28DRAFT_0720at 717.029 kb on + strand, within EX28DRAFT_0720at 717.029 kb on + strand, within EX28DRAFT_0720at 717.067 kb on + strand, within EX28DRAFT_0720

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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714,313 - EX28DRAFT_0717 0.20 +0.0
714,555 - EX28DRAFT_0717 0.47 +1.8
714,555 - EX28DRAFT_0717 0.47 -0.5
714,847 + EX28DRAFT_0717 0.80 +0.1
714,848 - EX28DRAFT_0717 0.80 -0.2
714,848 - EX28DRAFT_0717 0.80 -1.6
714,852 - EX28DRAFT_0717 0.80 -0.6
714,875 - EX28DRAFT_0717 0.83 -0.5
714,882 - EX28DRAFT_0717 0.84 -0.4
714,992 + +0.5
714,992 + -0.9
714,992 + -1.1
715,007 - -0.8
715,008 + +0.3
715,009 - -0.1
715,009 - -0.2
715,009 - +0.1
715,022 - -0.7
715,022 - -0.8
715,129 + -0.4
715,216 + -0.6
715,230 - +0.3
715,377 + EX28DRAFT_0718 0.19 +0.8
715,737 + EX28DRAFT_0718 0.57 +0.7
715,743 - EX28DRAFT_0718 0.57 +0.4
715,921 + EX28DRAFT_0718 0.76 -0.3
716,013 - EX28DRAFT_0718 0.86 +0.0
716,092 + +0.7
716,093 - -0.4
716,093 - +0.4
716,093 - -1.2
716,137 + +0.3
716,138 - +0.1
716,164 - -0.2
716,172 - +0.1
716,176 + -0.3
716,188 - -0.4
716,198 + +1.4
716,201 + -0.0
716,290 + +0.5
716,290 + -1.0
716,291 - -0.0
716,309 + +0.8
716,309 + -0.9
716,310 - -0.4
716,314 - +0.1
716,314 - -0.3
716,365 + +0.1
716,414 + EX28DRAFT_0719 0.16 -0.4
716,431 + EX28DRAFT_0719 0.19 -0.3
716,432 - EX28DRAFT_0719 0.19 -0.1
716,477 + EX28DRAFT_0719 0.26 +0.1
716,491 + EX28DRAFT_0719 0.28 -0.3
716,672 + EX28DRAFT_0719 0.56 -0.2
716,804 - EX28DRAFT_0719 0.77 -0.6
716,858 + EX28DRAFT_0719 0.85 +1.1
716,858 + EX28DRAFT_0719 0.85 -0.5
716,886 - EX28DRAFT_0719 0.89 +0.5
716,886 - EX28DRAFT_0719 0.89 -0.1
716,898 + -0.1
716,899 - +1.1
716,906 + -1.1
716,928 + +0.8
716,928 + -0.3
716,953 - -0.7
716,955 + +0.2
716,955 + +0.1
716,985 + -0.5
716,985 + -0.0
717,022 - EX28DRAFT_0720 0.14 +0.2
717,029 + EX28DRAFT_0720 0.17 +0.1
717,029 + EX28DRAFT_0720 0.17 -0.3
717,029 + EX28DRAFT_0720 0.17 -1.0
717,067 + EX28DRAFT_0720 0.33 +0.1

Or see this region's nucleotide sequence