Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0460

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0459 and EX28DRAFT_0460 are separated by 300 nucleotidesEX28DRAFT_0460 and EX28DRAFT_0461 are separated by 136 nucleotides EX28DRAFT_0459: EX28DRAFT_0459 - Superfamily I DNA and RNA helicases, at 443,269 to 445,050 _0459 EX28DRAFT_0460: EX28DRAFT_0460 - hypothetical protein, at 445,351 to 445,593 _0460 EX28DRAFT_0461: EX28DRAFT_0461 - tRNA_anti-like, at 445,730 to 446,512 _0461 Position (kb) 445 446Strain fitness (log2 ratio) -2 -1 0 1 2at 444.528 kb on + strand, within EX28DRAFT_0459at 444.529 kb on - strand, within EX28DRAFT_0459at 444.598 kb on + strand, within EX28DRAFT_0459at 444.710 kb on + strand, within EX28DRAFT_0459at 444.739 kb on + strand, within EX28DRAFT_0459at 444.740 kb on - strand, within EX28DRAFT_0459at 444.740 kb on - strand, within EX28DRAFT_0459at 444.740 kb on - strand, within EX28DRAFT_0459at 444.740 kb on - strand, within EX28DRAFT_0459at 444.744 kb on + strand, within EX28DRAFT_0459at 444.919 kb on + strandat 444.920 kb on - strandat 444.923 kb on + strandat 444.923 kb on + strandat 444.924 kb on - strandat 444.924 kb on - strandat 444.997 kb on + strandat 444.997 kb on + strandat 444.999 kb on + strandat 445.000 kb on - strandat 445.000 kb on - strandat 445.036 kb on + strandat 445.037 kb on - strandat 445.061 kb on + strandat 445.066 kb on + strandat 445.230 kb on - strandat 445.230 kb on - strandat 445.243 kb on - strandat 445.288 kb on - strandat 445.293 kb on + strandat 445.332 kb on + strandat 445.333 kb on - strandat 445.333 kb on - strandat 445.333 kb on - strandat 445.336 kb on + strandat 445.336 kb on + strandat 445.384 kb on - strand, within EX28DRAFT_0460at 445.384 kb on - strand, within EX28DRAFT_0460at 445.416 kb on + strand, within EX28DRAFT_0460at 445.417 kb on - strand, within EX28DRAFT_0460at 445.424 kb on + strand, within EX28DRAFT_0460at 445.425 kb on - strand, within EX28DRAFT_0460at 445.425 kb on - strand, within EX28DRAFT_0460at 445.428 kb on + strand, within EX28DRAFT_0460at 445.428 kb on + strand, within EX28DRAFT_0460at 445.429 kb on - strand, within EX28DRAFT_0460at 445.431 kb on + strand, within EX28DRAFT_0460at 445.431 kb on + strand, within EX28DRAFT_0460at 445.496 kb on - strand, within EX28DRAFT_0460at 445.541 kb on - strand, within EX28DRAFT_0460at 445.550 kb on + strand, within EX28DRAFT_0460at 445.550 kb on + strand, within EX28DRAFT_0460at 445.551 kb on - strand, within EX28DRAFT_0460at 445.551 kb on - strand, within EX28DRAFT_0460at 445.741 kb on + strandat 445.823 kb on + strand, within EX28DRAFT_0461at 445.835 kb on + strand, within EX28DRAFT_0461at 445.835 kb on + strand, within EX28DRAFT_0461at 445.836 kb on - strand, within EX28DRAFT_0461at 445.836 kb on - strand, within EX28DRAFT_0461at 445.836 kb on - strand, within EX28DRAFT_0461at 445.873 kb on - strand, within EX28DRAFT_0461at 445.965 kb on - strand, within EX28DRAFT_0461at 445.977 kb on - strand, within EX28DRAFT_0461at 445.984 kb on + strand, within EX28DRAFT_0461at 445.985 kb on - strand, within EX28DRAFT_0461at 445.985 kb on - strand, within EX28DRAFT_0461at 445.985 kb on - strand, within EX28DRAFT_0461at 446.207 kb on + strand, within EX28DRAFT_0461at 446.240 kb on + strand, within EX28DRAFT_0461at 446.284 kb on + strand, within EX28DRAFT_0461at 446.285 kb on - strand, within EX28DRAFT_0461at 446.316 kb on + strand, within EX28DRAFT_0461at 446.316 kb on + strand, within EX28DRAFT_0461at 446.317 kb on - strand, within EX28DRAFT_0461at 446.317 kb on - strand, within EX28DRAFT_0461at 446.347 kb on + strand, within EX28DRAFT_0461at 446.500 kb on + strandat 446.500 kb on + strandat 446.506 kb on + strandat 446.552 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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444,528 + EX28DRAFT_0459 0.71 +0.3
444,529 - EX28DRAFT_0459 0.71 -0.1
444,598 + EX28DRAFT_0459 0.75 +0.4
444,710 + EX28DRAFT_0459 0.81 +0.0
444,739 + EX28DRAFT_0459 0.82 -0.2
444,740 - EX28DRAFT_0459 0.83 -0.4
444,740 - EX28DRAFT_0459 0.83 +0.2
444,740 - EX28DRAFT_0459 0.83 +0.1
444,740 - EX28DRAFT_0459 0.83 +0.3
444,744 + EX28DRAFT_0459 0.83 -0.4
444,919 + -0.2
444,920 - -0.6
444,923 + -0.1
444,923 + +0.1
444,924 - -0.2
444,924 - -0.1
444,997 + +0.0
444,997 + +0.3
444,999 + -0.2
445,000 - +0.1
445,000 - +0.2
445,036 + -0.4
445,037 - -0.1
445,061 + -0.1
445,066 + -0.4
445,230 - -0.2
445,230 - -0.1
445,243 - -0.9
445,288 - -0.3
445,293 + -0.3
445,332 + +1.1
445,333 - +0.5
445,333 - -0.1
445,333 - +1.2
445,336 + -0.9
445,336 + +0.4
445,384 - EX28DRAFT_0460 0.14 +2.4
445,384 - EX28DRAFT_0460 0.14 +0.7
445,416 + EX28DRAFT_0460 0.27 +0.6
445,417 - EX28DRAFT_0460 0.27 -0.5
445,424 + EX28DRAFT_0460 0.30 -1.1
445,425 - EX28DRAFT_0460 0.30 -2.1
445,425 - EX28DRAFT_0460 0.30 -0.2
445,428 + EX28DRAFT_0460 0.32 -0.5
445,428 + EX28DRAFT_0460 0.32 +0.1
445,429 - EX28DRAFT_0460 0.32 -0.2
445,431 + EX28DRAFT_0460 0.33 -0.3
445,431 + EX28DRAFT_0460 0.33 -0.1
445,496 - EX28DRAFT_0460 0.60 +0.3
445,541 - EX28DRAFT_0460 0.78 -0.1
445,550 + EX28DRAFT_0460 0.82 -0.1
445,550 + EX28DRAFT_0460 0.82 +0.1
445,551 - EX28DRAFT_0460 0.82 +0.9
445,551 - EX28DRAFT_0460 0.82 -0.2
445,741 + -0.1
445,823 + EX28DRAFT_0461 0.12 +0.4
445,835 + EX28DRAFT_0461 0.13 -0.6
445,835 + EX28DRAFT_0461 0.13 -1.3
445,836 - EX28DRAFT_0461 0.14 +0.2
445,836 - EX28DRAFT_0461 0.14 -1.3
445,836 - EX28DRAFT_0461 0.14 -0.4
445,873 - EX28DRAFT_0461 0.18 -0.0
445,965 - EX28DRAFT_0461 0.30 +0.6
445,977 - EX28DRAFT_0461 0.32 -0.2
445,984 + EX28DRAFT_0461 0.32 -0.8
445,985 - EX28DRAFT_0461 0.33 +0.2
445,985 - EX28DRAFT_0461 0.33 +0.2
445,985 - EX28DRAFT_0461 0.33 +0.9
446,207 + EX28DRAFT_0461 0.61 -0.1
446,240 + EX28DRAFT_0461 0.65 -0.3
446,284 + EX28DRAFT_0461 0.71 -0.2
446,285 - EX28DRAFT_0461 0.71 -0.6
446,316 + EX28DRAFT_0461 0.75 -0.3
446,316 + EX28DRAFT_0461 0.75 +0.3
446,317 - EX28DRAFT_0461 0.75 -0.8
446,317 - EX28DRAFT_0461 0.75 +1.9
446,347 + EX28DRAFT_0461 0.79 -0.1
446,500 + +1.4
446,500 + -0.9
446,506 + -0.1
446,552 + -0.3

Or see this region's nucleotide sequence