Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0406

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0405 and EX28DRAFT_0406 are separated by 155 nucleotidesEX28DRAFT_0406 and EX28DRAFT_0407 are separated by 295 nucleotides EX28DRAFT_0405: EX28DRAFT_0405 - Predicted membrane protein, at 381,746 to 382,903 _0405 EX28DRAFT_0406: EX28DRAFT_0406 - Transcriptional regulators, at 383,059 to 384,081 _0406 EX28DRAFT_0407: EX28DRAFT_0407 - ABC-type sugar transport system, periplasmic component, at 384,377 to 385,375 _0407 Position (kb) 383 384 385Strain fitness (log2 ratio) -2 -1 0 1at 382.063 kb on + strand, within EX28DRAFT_0405at 382.128 kb on + strand, within EX28DRAFT_0405at 382.128 kb on + strand, within EX28DRAFT_0405at 382.141 kb on + strand, within EX28DRAFT_0405at 382.160 kb on + strand, within EX28DRAFT_0405at 382.161 kb on - strand, within EX28DRAFT_0405at 382.161 kb on - strand, within EX28DRAFT_0405at 382.161 kb on - strand, within EX28DRAFT_0405at 382.521 kb on - strand, within EX28DRAFT_0405at 382.601 kb on + strand, within EX28DRAFT_0405at 382.656 kb on + strand, within EX28DRAFT_0405at 382.679 kb on + strand, within EX28DRAFT_0405at 382.783 kb on - strand, within EX28DRAFT_0405at 382.786 kb on + strand, within EX28DRAFT_0405at 382.817 kb on + strandat 382.817 kb on + strandat 382.818 kb on - strandat 383.007 kb on + strandat 383.059 kb on - strandat 383.059 kb on - strandat 383.166 kb on - strand, within EX28DRAFT_0406at 383.264 kb on + strand, within EX28DRAFT_0406at 383.264 kb on + strand, within EX28DRAFT_0406at 383.265 kb on - strand, within EX28DRAFT_0406at 383.265 kb on - strand, within EX28DRAFT_0406at 383.329 kb on + strand, within EX28DRAFT_0406at 383.346 kb on + strand, within EX28DRAFT_0406at 383.347 kb on - strand, within EX28DRAFT_0406at 383.347 kb on - strand, within EX28DRAFT_0406at 383.347 kb on - strand, within EX28DRAFT_0406at 383.351 kb on - strand, within EX28DRAFT_0406at 383.406 kb on + strand, within EX28DRAFT_0406at 383.461 kb on - strand, within EX28DRAFT_0406at 383.619 kb on + strand, within EX28DRAFT_0406at 383.620 kb on - strand, within EX28DRAFT_0406at 383.772 kb on + strand, within EX28DRAFT_0406at 383.772 kb on + strand, within EX28DRAFT_0406at 383.789 kb on - strand, within EX28DRAFT_0406at 383.858 kb on + strand, within EX28DRAFT_0406at 383.859 kb on - strand, within EX28DRAFT_0406at 384.129 kb on + strandat 384.150 kb on - strandat 384.184 kb on + strandat 384.185 kb on - strandat 384.207 kb on + strandat 384.282 kb on + strandat 384.373 kb on + strandat 384.382 kb on + strandat 384.382 kb on + strandat 384.383 kb on - strandat 384.473 kb on + strandat 384.475 kb on + strandat 384.475 kb on + strandat 384.475 kb on + strandat 384.476 kb on - strandat 384.476 kb on - strandat 384.476 kb on - strandat 384.479 kb on + strand, within EX28DRAFT_0407at 384.479 kb on + strand, within EX28DRAFT_0407at 384.749 kb on + strand, within EX28DRAFT_0407at 384.750 kb on - strand, within EX28DRAFT_0407at 384.750 kb on - strand, within EX28DRAFT_0407at 384.762 kb on - strand, within EX28DRAFT_0407at 384.764 kb on + strand, within EX28DRAFT_0407at 384.764 kb on + strand, within EX28DRAFT_0407at 384.765 kb on - strand, within EX28DRAFT_0407at 384.796 kb on + strand, within EX28DRAFT_0407at 384.797 kb on - strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.927 kb on - strand, within EX28DRAFT_0407at 384.927 kb on - strand, within EX28DRAFT_0407at 384.978 kb on + strand, within EX28DRAFT_0407at 384.979 kb on - strand, within EX28DRAFT_0407at 384.979 kb on - strand, within EX28DRAFT_0407

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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382,063 + EX28DRAFT_0405 0.27 +0.7
382,128 + EX28DRAFT_0405 0.33 -0.1
382,128 + EX28DRAFT_0405 0.33 +0.0
382,141 + EX28DRAFT_0405 0.34 +0.0
382,160 + EX28DRAFT_0405 0.36 -0.3
382,161 - EX28DRAFT_0405 0.36 +0.7
382,161 - EX28DRAFT_0405 0.36 +1.0
382,161 - EX28DRAFT_0405 0.36 -0.0
382,521 - EX28DRAFT_0405 0.67 +0.2
382,601 + EX28DRAFT_0405 0.74 -0.6
382,656 + EX28DRAFT_0405 0.79 -1.6
382,679 + EX28DRAFT_0405 0.81 +0.0
382,783 - EX28DRAFT_0405 0.90 +0.2
382,786 + EX28DRAFT_0405 0.90 -2.3
382,817 + +0.5
382,817 + +0.1
382,818 - -0.4
383,007 + -0.2
383,059 - -0.2
383,059 - -0.5
383,166 - EX28DRAFT_0406 0.10 +0.4
383,264 + EX28DRAFT_0406 0.20 -0.2
383,264 + EX28DRAFT_0406 0.20 -0.6
383,265 - EX28DRAFT_0406 0.20 -0.6
383,265 - EX28DRAFT_0406 0.20 -0.4
383,329 + EX28DRAFT_0406 0.26 -0.1
383,346 + EX28DRAFT_0406 0.28 -1.7
383,347 - EX28DRAFT_0406 0.28 -0.2
383,347 - EX28DRAFT_0406 0.28 -1.2
383,347 - EX28DRAFT_0406 0.28 +0.1
383,351 - EX28DRAFT_0406 0.29 -0.9
383,406 + EX28DRAFT_0406 0.34 -0.0
383,461 - EX28DRAFT_0406 0.39 -0.3
383,619 + EX28DRAFT_0406 0.55 +0.4
383,620 - EX28DRAFT_0406 0.55 +0.1
383,772 + EX28DRAFT_0406 0.70 -1.1
383,772 + EX28DRAFT_0406 0.70 -1.5
383,789 - EX28DRAFT_0406 0.71 -0.6
383,858 + EX28DRAFT_0406 0.78 -0.9
383,859 - EX28DRAFT_0406 0.78 -2.7
384,129 + -0.8
384,150 - +0.5
384,184 + +0.1
384,185 - +0.1
384,207 + -0.3
384,282 + -2.5
384,373 + +0.2
384,382 + -0.7
384,382 + -0.3
384,383 - +0.2
384,473 + -0.1
384,475 + -0.0
384,475 + +0.0
384,475 + +0.1
384,476 - -0.2
384,476 - +0.3
384,476 - +0.5
384,479 + EX28DRAFT_0407 0.10 +0.2
384,479 + EX28DRAFT_0407 0.10 +0.8
384,749 + EX28DRAFT_0407 0.37 +0.3
384,750 - EX28DRAFT_0407 0.37 +1.3
384,750 - EX28DRAFT_0407 0.37 -0.7
384,762 - EX28DRAFT_0407 0.39 +0.1
384,764 + EX28DRAFT_0407 0.39 +0.4
384,764 + EX28DRAFT_0407 0.39 -0.8
384,765 - EX28DRAFT_0407 0.39 +0.7
384,796 + EX28DRAFT_0407 0.42 -1.1
384,797 - EX28DRAFT_0407 0.42 -0.0
384,926 + EX28DRAFT_0407 0.55 -0.3
384,926 + EX28DRAFT_0407 0.55 +0.2
384,926 + EX28DRAFT_0407 0.55 -0.5
384,926 + EX28DRAFT_0407 0.55 +0.2
384,926 + EX28DRAFT_0407 0.55 -0.1
384,927 - EX28DRAFT_0407 0.55 +0.3
384,927 - EX28DRAFT_0407 0.55 -0.4
384,978 + EX28DRAFT_0407 0.60 +0.4
384,979 - EX28DRAFT_0407 0.60 +0.2
384,979 - EX28DRAFT_0407 0.60 +0.6

Or see this region's nucleotide sequence