Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0394 and EX28DRAFT_0395 overlap by 1 nucleotides EX28DRAFT_0395 and EX28DRAFT_0396 are separated by 16 nucleotides EX28DRAFT_0396 and EX28DRAFT_0397 are separated by 47 nucleotides EX28DRAFT_0397 and EX28DRAFT_0398 are separated by 64 nucleotides
EX28DRAFT_0394: EX28DRAFT_0394 - Phosphotransferase System HPr (HPr) Family, at 368,134 to 369,264
_0394
EX28DRAFT_0395: EX28DRAFT_0395 - 1-phosphofructokinase, at 369,264 to 370,202
_0395
EX28DRAFT_0396: EX28DRAFT_0396 - PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component, at 370,219 to 371,904
_0396
EX28DRAFT_0397: EX28DRAFT_0397 - Endonuclease IV (EC 3.1.21.-), at 371,952 to 372,809
_0397
EX28DRAFT_0398: EX28DRAFT_0398 - conserved hypothetical integral membrane protein, at 372,874 to 373,920
_0398
Position (kb) 370
371
372 Strain fitness (log2 ratio) -1
0
1
2 at 369.287 kb on + strand at 369.458 kb on + strand, within EX28DRAFT_0395 at 370.050 kb on + strand, within EX28DRAFT_0395 at 370.051 kb on - strand, within EX28DRAFT_0395 at 370.082 kb on + strand, within EX28DRAFT_0395 at 370.082 kb on + strand, within EX28DRAFT_0395 at 370.083 kb on - strand, within EX28DRAFT_0395 at 370.088 kb on - strand, within EX28DRAFT_0395 at 370.186 kb on + strand at 370.196 kb on + strand at 370.196 kb on + strand at 370.197 kb on - strand at 370.201 kb on - strand at 370.267 kb on + strand at 370.268 kb on - strand at 370.268 kb on - strand at 370.356 kb on - strand at 370.419 kb on + strand, within EX28DRAFT_0396 at 370.480 kb on + strand, within EX28DRAFT_0396 at 370.480 kb on + strand, within EX28DRAFT_0396 at 370.756 kb on + strand, within EX28DRAFT_0396 at 370.757 kb on - strand, within EX28DRAFT_0396 at 370.757 kb on - strand, within EX28DRAFT_0396 at 370.761 kb on + strand, within EX28DRAFT_0396 at 370.762 kb on - strand, within EX28DRAFT_0396 at 370.762 kb on - strand, within EX28DRAFT_0396 at 370.869 kb on + strand, within EX28DRAFT_0396 at 370.919 kb on - strand, within EX28DRAFT_0396 at 370.953 kb on + strand, within EX28DRAFT_0396 at 370.953 kb on + strand, within EX28DRAFT_0396 at 370.954 kb on - strand, within EX28DRAFT_0396 at 370.980 kb on + strand, within EX28DRAFT_0396 at 371.172 kb on + strand, within EX28DRAFT_0396 at 371.238 kb on + strand, within EX28DRAFT_0396 at 371.308 kb on + strand, within EX28DRAFT_0396 at 371.309 kb on - strand, within EX28DRAFT_0396 at 371.491 kb on + strand, within EX28DRAFT_0396 at 371.491 kb on + strand, within EX28DRAFT_0396 at 371.492 kb on - strand, within EX28DRAFT_0396 at 371.492 kb on - strand, within EX28DRAFT_0396 at 371.492 kb on - strand, within EX28DRAFT_0396 at 371.679 kb on - strand, within EX28DRAFT_0396 at 372.069 kb on - strand, within EX28DRAFT_0397 at 372.179 kb on - strand, within EX28DRAFT_0397 at 372.182 kb on + strand, within EX28DRAFT_0397 at 372.182 kb on + strand, within EX28DRAFT_0397 at 372.183 kb on - strand, within EX28DRAFT_0397 at 372.183 kb on - strand, within EX28DRAFT_0397 at 372.192 kb on + strand, within EX28DRAFT_0397 at 372.192 kb on + strand, within EX28DRAFT_0397 at 372.283 kb on - strand, within EX28DRAFT_0397 at 372.300 kb on - strand, within EX28DRAFT_0397 at 372.434 kb on + strand, within EX28DRAFT_0397 at 372.434 kb on + strand, within EX28DRAFT_0397 at 372.525 kb on + strand, within EX28DRAFT_0397 at 372.525 kb on + strand, within EX28DRAFT_0397 at 372.526 kb on - strand, within EX28DRAFT_0397 at 372.526 kb on - strand, within EX28DRAFT_0397 at 372.596 kb on - strand, within EX28DRAFT_0397 at 372.634 kb on + strand, within EX28DRAFT_0397 at 372.635 kb on - strand, within EX28DRAFT_0397 at 372.635 kb on - strand, within EX28DRAFT_0397 at 372.635 kb on - strand, within EX28DRAFT_0397 at 372.802 kb on + strand at 372.839 kb on - strand at 372.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 369,287 + +1.6 369,458 + EX28DRAFT_0395 0.21 +1.1 370,050 + EX28DRAFT_0395 0.84 +1.0 370,051 - EX28DRAFT_0395 0.84 +1.3 370,082 + EX28DRAFT_0395 0.87 +0.4 370,082 + EX28DRAFT_0395 0.87 +1.8 370,083 - EX28DRAFT_0395 0.87 +0.7 370,088 - EX28DRAFT_0395 0.88 +1.4 370,186 + +0.9 370,196 + -0.3 370,196 + +1.2 370,197 - +1.2 370,201 - +1.5 370,267 + -0.7 370,268 - -0.4 370,268 - -1.1 370,356 - -1.4 370,419 + EX28DRAFT_0396 0.12 -0.4 370,480 + EX28DRAFT_0396 0.15 -0.7 370,480 + EX28DRAFT_0396 0.15 -0.9 370,756 + EX28DRAFT_0396 0.32 -0.2 370,757 - EX28DRAFT_0396 0.32 -1.0 370,757 - EX28DRAFT_0396 0.32 -0.6 370,761 + EX28DRAFT_0396 0.32 -0.2 370,762 - EX28DRAFT_0396 0.32 -1.1 370,762 - EX28DRAFT_0396 0.32 -0.4 370,869 + EX28DRAFT_0396 0.39 -0.1 370,919 - EX28DRAFT_0396 0.42 -0.4 370,953 + EX28DRAFT_0396 0.44 -0.8 370,953 + EX28DRAFT_0396 0.44 +0.0 370,954 - EX28DRAFT_0396 0.44 +0.2 370,980 + EX28DRAFT_0396 0.45 -0.5 371,172 + EX28DRAFT_0396 0.57 -0.5 371,238 + EX28DRAFT_0396 0.60 -0.3 371,308 + EX28DRAFT_0396 0.65 -0.6 371,309 - EX28DRAFT_0396 0.65 -0.6 371,491 + EX28DRAFT_0396 0.75 -1.0 371,491 + EX28DRAFT_0396 0.75 +0.3 371,492 - EX28DRAFT_0396 0.76 -0.0 371,492 - EX28DRAFT_0396 0.76 -1.1 371,492 - EX28DRAFT_0396 0.76 -1.5 371,679 - EX28DRAFT_0396 0.87 -1.2 372,069 - EX28DRAFT_0397 0.14 -0.2 372,179 - EX28DRAFT_0397 0.26 +0.7 372,182 + EX28DRAFT_0397 0.27 +0.3 372,182 + EX28DRAFT_0397 0.27 -0.3 372,183 - EX28DRAFT_0397 0.27 +0.3 372,183 - EX28DRAFT_0397 0.27 -0.3 372,192 + EX28DRAFT_0397 0.28 +0.1 372,192 + EX28DRAFT_0397 0.28 -0.2 372,283 - EX28DRAFT_0397 0.39 -0.2 372,300 - EX28DRAFT_0397 0.41 +0.0 372,434 + EX28DRAFT_0397 0.56 -0.2 372,434 + EX28DRAFT_0397 0.56 -0.0 372,525 + EX28DRAFT_0397 0.67 +0.1 372,525 + EX28DRAFT_0397 0.67 -0.1 372,526 - EX28DRAFT_0397 0.67 -0.7 372,526 - EX28DRAFT_0397 0.67 -0.3 372,596 - EX28DRAFT_0397 0.75 -0.8 372,634 + EX28DRAFT_0397 0.79 +0.7 372,635 - EX28DRAFT_0397 0.80 +0.0 372,635 - EX28DRAFT_0397 0.80 -0.2 372,635 - EX28DRAFT_0397 0.80 +0.1 372,802 + +0.4 372,839 - -1.0 372,839 - +0.2
Or see this region's nucleotide sequence