Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0204 and EX28DRAFT_0205 are separated by 172 nucleotides EX28DRAFT_0205 and EX28DRAFT_0206 overlap by 1 nucleotides EX28DRAFT_0206 and EX28DRAFT_0207 overlap by 1 nucleotides
EX28DRAFT_0204: EX28DRAFT_0204 - Dyp-type peroxidase family, at 158,474 to 159,373
_0204
EX28DRAFT_0205: EX28DRAFT_0205 - sulfate/thiosulfate-binding protein, at 159,546 to 160,559
_0205
EX28DRAFT_0206: EX28DRAFT_0206 - sulfate ABC transporter, permease protein CysT, at 160,559 to 161,392
_0206
EX28DRAFT_0207: EX28DRAFT_0207 - sulfate ABC transporter, permease protein CysW, at 161,392 to 162,267
_0207
Position (kb)
159
160
161 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 158.787 kb on + strand, within EX28DRAFT_0204 at 158.842 kb on - strand, within EX28DRAFT_0204 at 158.981 kb on + strand, within EX28DRAFT_0204 at 158.981 kb on + strand, within EX28DRAFT_0204 at 158.982 kb on - strand, within EX28DRAFT_0204 at 159.065 kb on - strand, within EX28DRAFT_0204 at 159.067 kb on + strand, within EX28DRAFT_0204 at 159.068 kb on - strand, within EX28DRAFT_0204 at 159.239 kb on + strand, within EX28DRAFT_0204 at 159.241 kb on + strand, within EX28DRAFT_0204 at 159.241 kb on + strand, within EX28DRAFT_0204 at 159.335 kb on + strand at 159.336 kb on - strand at 159.336 kb on - strand at 159.372 kb on - strand at 159.372 kb on - strand at 159.372 kb on - strand at 159.434 kb on - strand at 159.470 kb on + strand at 159.497 kb on + strand at 159.503 kb on + strand at 159.503 kb on + strand at 159.503 kb on + strand at 159.504 kb on - strand at 159.506 kb on + strand at 159.507 kb on - strand at 159.512 kb on + strand at 159.512 kb on + strand at 159.513 kb on - strand at 159.513 kb on - strand at 159.513 kb on - strand at 159.514 kb on + strand at 159.514 kb on + strand at 159.514 kb on + strand at 159.514 kb on + strand at 159.514 kb on + strand at 159.515 kb on - strand at 159.515 kb on - strand at 159.515 kb on - strand at 159.515 kb on - strand at 159.515 kb on - strand at 159.515 kb on - strand at 159.519 kb on + strand at 159.520 kb on - strand at 159.533 kb on - strand at 159.535 kb on - strand at 159.554 kb on + strand at 159.629 kb on - strand at 159.672 kb on - strand, within EX28DRAFT_0205 at 159.801 kb on + strand, within EX28DRAFT_0205 at 159.802 kb on - strand, within EX28DRAFT_0205 at 159.802 kb on - strand, within EX28DRAFT_0205 at 160.023 kb on - strand, within EX28DRAFT_0205 at 160.026 kb on + strand, within EX28DRAFT_0205 at 160.350 kb on + strand, within EX28DRAFT_0205 at 160.351 kb on - strand, within EX28DRAFT_0205 at 160.356 kb on + strand, within EX28DRAFT_0205 at 160.393 kb on - strand, within EX28DRAFT_0205 at 160.393 kb on - strand, within EX28DRAFT_0205 at 160.417 kb on + strand, within EX28DRAFT_0205 at 160.418 kb on - strand, within EX28DRAFT_0205 at 160.418 kb on - strand, within EX28DRAFT_0205 at 160.436 kb on + strand, within EX28DRAFT_0205 at 160.437 kb on - strand, within EX28DRAFT_0205 at 160.528 kb on + strand at 160.553 kb on + strand at 160.553 kb on + strand at 160.553 kb on + strand at 160.554 kb on - strand at 160.557 kb on + strand at 160.557 kb on + strand at 160.558 kb on - strand at 160.558 kb on - strand at 160.603 kb on - strand at 160.738 kb on + strand, within EX28DRAFT_0206 at 160.738 kb on + strand, within EX28DRAFT_0206 at 160.739 kb on - strand, within EX28DRAFT_0206 at 160.970 kb on + strand, within EX28DRAFT_0206 at 160.970 kb on + strand, within EX28DRAFT_0206 at 160.970 kb on + strand, within EX28DRAFT_0206 at 160.971 kb on - strand, within EX28DRAFT_0206 at 161.382 kb on + strand at 161.382 kb on + strand at 161.383 kb on - strand at 161.383 kb on - strand at 161.404 kb on - strand at 161.509 kb on + strand, within EX28DRAFT_0207 at 161.509 kb on + strand, within EX28DRAFT_0207 at 161.510 kb on - strand, within EX28DRAFT_0207 at 161.510 kb on - strand, within EX28DRAFT_0207 at 161.511 kb on + strand, within EX28DRAFT_0207 at 161.512 kb on - strand, within EX28DRAFT_0207
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 158,787 + EX28DRAFT_0204 0.35 +0.9 158,842 - EX28DRAFT_0204 0.41 +0.0 158,981 + EX28DRAFT_0204 0.56 -0.0 158,981 + EX28DRAFT_0204 0.56 +0.3 158,982 - EX28DRAFT_0204 0.56 -0.1 159,065 - EX28DRAFT_0204 0.66 -0.3 159,067 + EX28DRAFT_0204 0.66 -0.5 159,068 - EX28DRAFT_0204 0.66 +0.1 159,239 + EX28DRAFT_0204 0.85 -0.8 159,241 + EX28DRAFT_0204 0.85 -0.1 159,241 + EX28DRAFT_0204 0.85 +0.5 159,335 + -0.1 159,336 - +0.6 159,336 - -0.5 159,372 - +1.1 159,372 - -0.6 159,372 - -0.4 159,434 - +0.1 159,470 + -1.8 159,497 + -1.0 159,503 + +0.4 159,503 + -0.1 159,503 + +1.8 159,504 - -0.1 159,506 + -0.4 159,507 - -2.5 159,512 + -0.5 159,512 + -0.4 159,513 - -2.3 159,513 - -2.4 159,513 - -2.7 159,514 + +0.9 159,514 + -0.5 159,514 + -0.2 159,514 + -0.2 159,514 + -0.2 159,515 - -2.3 159,515 - -3.5 159,515 - -3.2 159,515 - -3.2 159,515 - -3.4 159,515 - -1.7 159,519 + -0.2 159,520 - -2.4 159,533 - -2.3 159,535 - -1.5 159,554 + -2.9 159,629 - -2.7 159,672 - EX28DRAFT_0205 0.12 -2.8 159,801 + EX28DRAFT_0205 0.25 -1.2 159,802 - EX28DRAFT_0205 0.25 -1.5 159,802 - EX28DRAFT_0205 0.25 -2.7 160,023 - EX28DRAFT_0205 0.47 -2.1 160,026 + EX28DRAFT_0205 0.47 -2.0 160,350 + EX28DRAFT_0205 0.79 -1.2 160,351 - EX28DRAFT_0205 0.79 -3.5 160,356 + EX28DRAFT_0205 0.80 -1.9 160,393 - EX28DRAFT_0205 0.84 -2.2 160,393 - EX28DRAFT_0205 0.84 -1.6 160,417 + EX28DRAFT_0205 0.86 -1.3 160,418 - EX28DRAFT_0205 0.86 -1.9 160,418 - EX28DRAFT_0205 0.86 -3.7 160,436 + EX28DRAFT_0205 0.88 -2.6 160,437 - EX28DRAFT_0205 0.88 -1.1 160,528 + -3.0 160,553 + -1.1 160,553 + -0.8 160,553 + -3.1 160,554 - -3.2 160,557 + -1.5 160,557 + -1.6 160,558 - -2.2 160,558 - +1.8 160,603 - -3.7 160,738 + EX28DRAFT_0206 0.21 -4.1 160,738 + EX28DRAFT_0206 0.21 -3.6 160,739 - EX28DRAFT_0206 0.22 -0.3 160,970 + EX28DRAFT_0206 0.49 -2.2 160,970 + EX28DRAFT_0206 0.49 -2.6 160,970 + EX28DRAFT_0206 0.49 -2.0 160,971 - EX28DRAFT_0206 0.49 -3.2 161,382 + -2.5 161,382 + -3.5 161,383 - -2.0 161,383 - -3.5 161,404 - -2.6 161,509 + EX28DRAFT_0207 0.13 -3.0 161,509 + EX28DRAFT_0207 0.13 -1.7 161,510 - EX28DRAFT_0207 0.13 -2.5 161,510 - EX28DRAFT_0207 0.13 -2.6 161,511 + EX28DRAFT_0207 0.14 -4.4 161,512 - EX28DRAFT_0207 0.14 -1.8
Or see this region's nucleotide sequence