Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0198 and EX28DRAFT_0199 are separated by 56 nucleotides EX28DRAFT_0199 and EX28DRAFT_0200 overlap by 1 nucleotides
EX28DRAFT_0198: EX28DRAFT_0198 - Malic enzyme, at 152,558 to 154,837
_0198
EX28DRAFT_0199: EX28DRAFT_0199 - coproporphyrinogen oxidase (EC 1.3.3.3), at 154,894 to 155,793
_0199
EX28DRAFT_0200: EX28DRAFT_0200 - N-acetylmuramoyl-L-alanine amidase, at 155,793 to 156,668
_0200
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.951 kb on + strand, within EX28DRAFT_0198 at 154.097 kb on + strand, within EX28DRAFT_0198 at 154.098 kb on - strand, within EX28DRAFT_0198 at 154.100 kb on + strand, within EX28DRAFT_0198 at 154.101 kb on - strand, within EX28DRAFT_0198 at 154.352 kb on + strand, within EX28DRAFT_0198 at 154.352 kb on + strand, within EX28DRAFT_0198 at 154.353 kb on - strand, within EX28DRAFT_0198 at 154.353 kb on - strand, within EX28DRAFT_0198 at 154.353 kb on - strand, within EX28DRAFT_0198 at 154.477 kb on + strand, within EX28DRAFT_0198 at 154.478 kb on - strand, within EX28DRAFT_0198 at 154.603 kb on + strand, within EX28DRAFT_0198 at 154.636 kb on + strand at 154.645 kb on + strand at 154.676 kb on + strand at 154.716 kb on + strand at 154.784 kb on - strand at 154.836 kb on - strand at 154.895 kb on + strand at 154.896 kb on - strand at 154.896 kb on - strand at 154.896 kb on - strand at 154.967 kb on + strand at 155.169 kb on - strand, within EX28DRAFT_0199 at 155.391 kb on - strand, within EX28DRAFT_0199 at 155.846 kb on + strand at 156.027 kb on - strand, within EX28DRAFT_0200 at 156.027 kb on - strand, within EX28DRAFT_0200 at 156.041 kb on + strand, within EX28DRAFT_0200 at 156.042 kb on - strand, within EX28DRAFT_0200 at 156.075 kb on - strand, within EX28DRAFT_0200 at 156.109 kb on - strand, within EX28DRAFT_0200 at 156.252 kb on - strand, within EX28DRAFT_0200 at 156.252 kb on - strand, within EX28DRAFT_0200 at 156.275 kb on + strand, within EX28DRAFT_0200 at 156.276 kb on - strand, within EX28DRAFT_0200 at 156.276 kb on - strand, within EX28DRAFT_0200 at 156.319 kb on + strand, within EX28DRAFT_0200 at 156.319 kb on + strand, within EX28DRAFT_0200 at 156.680 kb on - strand at 156.703 kb on + strand at 156.704 kb on - strand at 156.705 kb on + strand at 156.706 kb on - strand at 156.711 kb on - strand at 156.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 153,951 + EX28DRAFT_0198 0.61 -0.2 154,097 + EX28DRAFT_0198 0.68 -1.0 154,098 - EX28DRAFT_0198 0.68 +0.2 154,100 + EX28DRAFT_0198 0.68 +1.1 154,101 - EX28DRAFT_0198 0.68 +1.1 154,352 + EX28DRAFT_0198 0.79 -0.1 154,352 + EX28DRAFT_0198 0.79 -0.0 154,353 - EX28DRAFT_0198 0.79 +0.4 154,353 - EX28DRAFT_0198 0.79 +0.5 154,353 - EX28DRAFT_0198 0.79 -0.2 154,477 + EX28DRAFT_0198 0.84 +0.0 154,478 - EX28DRAFT_0198 0.84 -2.0 154,603 + EX28DRAFT_0198 0.90 +0.3 154,636 + +0.1 154,645 + +0.1 154,676 + -1.2 154,716 + +2.0 154,784 - -1.8 154,836 - -0.1 154,895 + -0.1 154,896 - +0.1 154,896 - +0.2 154,896 - +0.2 154,967 + -0.6 155,169 - EX28DRAFT_0199 0.31 -0.8 155,391 - EX28DRAFT_0199 0.55 -2.9 155,846 + -1.5 156,027 - EX28DRAFT_0200 0.27 +0.6 156,027 - EX28DRAFT_0200 0.27 +1.0 156,041 + EX28DRAFT_0200 0.28 -0.4 156,042 - EX28DRAFT_0200 0.28 +0.1 156,075 - EX28DRAFT_0200 0.32 +0.7 156,109 - EX28DRAFT_0200 0.36 +0.3 156,252 - EX28DRAFT_0200 0.52 +0.0 156,252 - EX28DRAFT_0200 0.52 -0.4 156,275 + EX28DRAFT_0200 0.55 -0.3 156,276 - EX28DRAFT_0200 0.55 -0.1 156,276 - EX28DRAFT_0200 0.55 +0.4 156,319 + EX28DRAFT_0200 0.60 -0.4 156,319 + EX28DRAFT_0200 0.60 -0.7 156,680 - -0.9 156,703 + -0.7 156,704 - +0.2 156,705 + -0.0 156,706 - +0.4 156,711 - +0.2 156,768 - -0.5
Or see this region's nucleotide sequence