Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0199

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0198 and EX28DRAFT_0199 are separated by 56 nucleotidesEX28DRAFT_0199 and EX28DRAFT_0200 overlap by 1 nucleotides EX28DRAFT_0198: EX28DRAFT_0198 - Malic enzyme, at 152,558 to 154,837 _0198 EX28DRAFT_0199: EX28DRAFT_0199 - coproporphyrinogen oxidase (EC 1.3.3.3), at 154,894 to 155,793 _0199 EX28DRAFT_0200: EX28DRAFT_0200 - N-acetylmuramoyl-L-alanine amidase, at 155,793 to 156,668 _0200 Position (kb) 154 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 153.951 kb on + strand, within EX28DRAFT_0198at 154.097 kb on + strand, within EX28DRAFT_0198at 154.098 kb on - strand, within EX28DRAFT_0198at 154.100 kb on + strand, within EX28DRAFT_0198at 154.101 kb on - strand, within EX28DRAFT_0198at 154.352 kb on + strand, within EX28DRAFT_0198at 154.352 kb on + strand, within EX28DRAFT_0198at 154.353 kb on - strand, within EX28DRAFT_0198at 154.353 kb on - strand, within EX28DRAFT_0198at 154.353 kb on - strand, within EX28DRAFT_0198at 154.477 kb on + strand, within EX28DRAFT_0198at 154.478 kb on - strand, within EX28DRAFT_0198at 154.603 kb on + strand, within EX28DRAFT_0198at 154.636 kb on + strandat 154.645 kb on + strandat 154.676 kb on + strandat 154.716 kb on + strandat 154.784 kb on - strandat 154.836 kb on - strandat 154.895 kb on + strandat 154.896 kb on - strandat 154.896 kb on - strandat 154.896 kb on - strandat 154.967 kb on + strandat 155.169 kb on - strand, within EX28DRAFT_0199at 155.391 kb on - strand, within EX28DRAFT_0199at 155.846 kb on + strandat 156.027 kb on - strand, within EX28DRAFT_0200at 156.027 kb on - strand, within EX28DRAFT_0200at 156.041 kb on + strand, within EX28DRAFT_0200at 156.042 kb on - strand, within EX28DRAFT_0200at 156.075 kb on - strand, within EX28DRAFT_0200at 156.109 kb on - strand, within EX28DRAFT_0200at 156.252 kb on - strand, within EX28DRAFT_0200at 156.252 kb on - strand, within EX28DRAFT_0200at 156.275 kb on + strand, within EX28DRAFT_0200at 156.276 kb on - strand, within EX28DRAFT_0200at 156.276 kb on - strand, within EX28DRAFT_0200at 156.319 kb on + strand, within EX28DRAFT_0200at 156.319 kb on + strand, within EX28DRAFT_0200at 156.680 kb on - strandat 156.703 kb on + strandat 156.704 kb on - strandat 156.705 kb on + strandat 156.706 kb on - strandat 156.711 kb on - strandat 156.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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153,951 + EX28DRAFT_0198 0.61 -0.2
154,097 + EX28DRAFT_0198 0.68 -1.0
154,098 - EX28DRAFT_0198 0.68 +0.2
154,100 + EX28DRAFT_0198 0.68 +1.1
154,101 - EX28DRAFT_0198 0.68 +1.1
154,352 + EX28DRAFT_0198 0.79 -0.1
154,352 + EX28DRAFT_0198 0.79 -0.0
154,353 - EX28DRAFT_0198 0.79 +0.4
154,353 - EX28DRAFT_0198 0.79 +0.5
154,353 - EX28DRAFT_0198 0.79 -0.2
154,477 + EX28DRAFT_0198 0.84 +0.0
154,478 - EX28DRAFT_0198 0.84 -2.0
154,603 + EX28DRAFT_0198 0.90 +0.3
154,636 + +0.1
154,645 + +0.1
154,676 + -1.2
154,716 + +2.0
154,784 - -1.8
154,836 - -0.1
154,895 + -0.1
154,896 - +0.1
154,896 - +0.2
154,896 - +0.2
154,967 + -0.6
155,169 - EX28DRAFT_0199 0.31 -0.8
155,391 - EX28DRAFT_0199 0.55 -2.9
155,846 + -1.5
156,027 - EX28DRAFT_0200 0.27 +0.6
156,027 - EX28DRAFT_0200 0.27 +1.0
156,041 + EX28DRAFT_0200 0.28 -0.4
156,042 - EX28DRAFT_0200 0.28 +0.1
156,075 - EX28DRAFT_0200 0.32 +0.7
156,109 - EX28DRAFT_0200 0.36 +0.3
156,252 - EX28DRAFT_0200 0.52 +0.0
156,252 - EX28DRAFT_0200 0.52 -0.4
156,275 + EX28DRAFT_0200 0.55 -0.3
156,276 - EX28DRAFT_0200 0.55 -0.1
156,276 - EX28DRAFT_0200 0.55 +0.4
156,319 + EX28DRAFT_0200 0.60 -0.4
156,319 + EX28DRAFT_0200 0.60 -0.7
156,680 - -0.9
156,703 + -0.7
156,704 - +0.2
156,705 + -0.0
156,706 - +0.4
156,711 - +0.2
156,768 - -0.5

Or see this region's nucleotide sequence