Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0193

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0192 and EX28DRAFT_0193 are separated by 152 nucleotidesEX28DRAFT_0193 and EX28DRAFT_0194 are separated by 66 nucleotidesEX28DRAFT_0194 and EX28DRAFT_0195 are separated by 101 nucleotides EX28DRAFT_0192: EX28DRAFT_0192 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 143,585 to 145,279 _0192 EX28DRAFT_0193: EX28DRAFT_0193 - glutamate synthase small subunit family protein, proteobacterial, at 145,432 to 147,408 _0193 EX28DRAFT_0194: EX28DRAFT_0194 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 147,475 to 148,068 _0194 EX28DRAFT_0195: EX28DRAFT_0195 - Protein of unknown function (DUF1176), at 148,170 to 149,213 _0195 Position (kb) 145 146 147 148Strain fitness (log2 ratio) -1 0 1at 144.435 kb on + strand, within EX28DRAFT_0192at 144.436 kb on - strand, within EX28DRAFT_0192at 144.436 kb on - strand, within EX28DRAFT_0192at 144.449 kb on - strand, within EX28DRAFT_0192at 144.451 kb on - strand, within EX28DRAFT_0192at 144.451 kb on - strand, within EX28DRAFT_0192at 144.472 kb on + strand, within EX28DRAFT_0192at 144.610 kb on + strand, within EX28DRAFT_0192at 144.611 kb on - strand, within EX28DRAFT_0192at 144.694 kb on + strand, within EX28DRAFT_0192at 144.739 kb on + strand, within EX28DRAFT_0192at 145.022 kb on + strand, within EX28DRAFT_0192at 145.023 kb on - strand, within EX28DRAFT_0192at 145.150 kb on + strandat 145.151 kb on - strandat 145.226 kb on + strandat 145.228 kb on + strandat 145.229 kb on - strandat 145.324 kb on - strandat 145.377 kb on + strandat 145.377 kb on + strandat 145.377 kb on + strandat 145.381 kb on + strandat 145.382 kb on - strandat 145.393 kb on - strandat 145.393 kb on - strandat 145.443 kb on + strandat 145.444 kb on - strandat 145.671 kb on - strand, within EX28DRAFT_0193at 145.702 kb on - strand, within EX28DRAFT_0193at 145.885 kb on - strand, within EX28DRAFT_0193at 146.300 kb on + strand, within EX28DRAFT_0193at 146.344 kb on + strand, within EX28DRAFT_0193at 146.344 kb on + strand, within EX28DRAFT_0193at 146.344 kb on + strand, within EX28DRAFT_0193at 146.344 kb on + strand, within EX28DRAFT_0193at 146.345 kb on - strand, within EX28DRAFT_0193at 146.410 kb on - strand, within EX28DRAFT_0193at 146.495 kb on - strand, within EX28DRAFT_0193at 146.514 kb on - strand, within EX28DRAFT_0193at 146.585 kb on + strand, within EX28DRAFT_0193at 146.585 kb on + strand, within EX28DRAFT_0193at 146.586 kb on - strand, within EX28DRAFT_0193at 146.589 kb on + strand, within EX28DRAFT_0193at 146.654 kb on + strand, within EX28DRAFT_0193at 146.666 kb on - strand, within EX28DRAFT_0193at 146.666 kb on - strand, within EX28DRAFT_0193at 146.679 kb on + strand, within EX28DRAFT_0193at 146.695 kb on + strand, within EX28DRAFT_0193at 146.696 kb on - strand, within EX28DRAFT_0193at 146.834 kb on + strand, within EX28DRAFT_0193at 146.835 kb on - strand, within EX28DRAFT_0193at 147.406 kb on + strandat 147.441 kb on - strandat 147.441 kb on - strandat 147.443 kb on + strandat 147.444 kb on - strandat 147.444 kb on - strandat 147.445 kb on + strandat 147.446 kb on - strandat 147.523 kb on + strandat 147.537 kb on + strand, within EX28DRAFT_0194at 147.547 kb on + strand, within EX28DRAFT_0194at 147.547 kb on + strand, within EX28DRAFT_0194at 147.555 kb on + strand, within EX28DRAFT_0194at 147.598 kb on + strand, within EX28DRAFT_0194at 147.599 kb on - strand, within EX28DRAFT_0194at 147.631 kb on + strand, within EX28DRAFT_0194at 147.631 kb on + strand, within EX28DRAFT_0194at 147.631 kb on + strand, within EX28DRAFT_0194at 147.632 kb on - strand, within EX28DRAFT_0194at 147.632 kb on - strand, within EX28DRAFT_0194at 147.827 kb on + strand, within EX28DRAFT_0194at 147.828 kb on - strand, within EX28DRAFT_0194at 147.828 kb on - strand, within EX28DRAFT_0194at 147.831 kb on + strand, within EX28DRAFT_0194at 147.831 kb on + strand, within EX28DRAFT_0194at 147.831 kb on + strand, within EX28DRAFT_0194at 147.832 kb on - strand, within EX28DRAFT_0194at 147.832 kb on - strand, within EX28DRAFT_0194at 147.881 kb on - strand, within EX28DRAFT_0194at 147.999 kb on + strand, within EX28DRAFT_0194at 148.067 kb on - strandat 148.084 kb on + strandat 148.092 kb on - strandat 148.092 kb on - strandat 148.128 kb on + strandat 148.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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144,435 + EX28DRAFT_0192 0.50 +0.8
144,436 - EX28DRAFT_0192 0.50 -0.2
144,436 - EX28DRAFT_0192 0.50 +0.7
144,449 - EX28DRAFT_0192 0.51 +0.2
144,451 - EX28DRAFT_0192 0.51 -0.1
144,451 - EX28DRAFT_0192 0.51 +0.6
144,472 + EX28DRAFT_0192 0.52 +0.2
144,610 + EX28DRAFT_0192 0.60 +0.1
144,611 - EX28DRAFT_0192 0.61 -0.0
144,694 + EX28DRAFT_0192 0.65 +0.3
144,739 + EX28DRAFT_0192 0.68 +0.2
145,022 + EX28DRAFT_0192 0.85 -0.0
145,023 - EX28DRAFT_0192 0.85 -0.3
145,150 + +0.0
145,151 - +0.3
145,226 + -0.1
145,228 + -0.1
145,229 - -0.2
145,324 - -0.1
145,377 + +0.1
145,377 + +0.1
145,377 + -0.4
145,381 + +0.3
145,382 - +0.1
145,393 - +1.0
145,393 - -0.4
145,443 + -0.9
145,444 - -0.4
145,671 - EX28DRAFT_0193 0.12 +0.3
145,702 - EX28DRAFT_0193 0.14 +0.3
145,885 - EX28DRAFT_0193 0.23 -1.1
146,300 + EX28DRAFT_0193 0.44 -0.3
146,344 + EX28DRAFT_0193 0.46 -0.1
146,344 + EX28DRAFT_0193 0.46 +1.5
146,344 + EX28DRAFT_0193 0.46 -0.0
146,344 + EX28DRAFT_0193 0.46 -0.5
146,345 - EX28DRAFT_0193 0.46 +0.2
146,410 - EX28DRAFT_0193 0.49 +0.0
146,495 - EX28DRAFT_0193 0.54 +0.3
146,514 - EX28DRAFT_0193 0.55 -0.4
146,585 + EX28DRAFT_0193 0.58 -0.1
146,585 + EX28DRAFT_0193 0.58 +0.7
146,586 - EX28DRAFT_0193 0.58 +0.1
146,589 + EX28DRAFT_0193 0.59 +0.7
146,654 + EX28DRAFT_0193 0.62 -0.1
146,666 - EX28DRAFT_0193 0.62 +0.7
146,666 - EX28DRAFT_0193 0.62 +0.7
146,679 + EX28DRAFT_0193 0.63 +0.6
146,695 + EX28DRAFT_0193 0.64 +0.2
146,696 - EX28DRAFT_0193 0.64 +0.6
146,834 + EX28DRAFT_0193 0.71 -0.4
146,835 - EX28DRAFT_0193 0.71 -0.1
147,406 + +0.0
147,441 - +0.4
147,441 - +0.3
147,443 + +0.9
147,444 - -1.6
147,444 - -0.4
147,445 + +0.3
147,446 - +0.0
147,523 + +1.3
147,537 + EX28DRAFT_0194 0.10 +0.4
147,547 + EX28DRAFT_0194 0.12 +0.1
147,547 + EX28DRAFT_0194 0.12 +0.1
147,555 + EX28DRAFT_0194 0.13 +0.1
147,598 + EX28DRAFT_0194 0.21 -0.1
147,599 - EX28DRAFT_0194 0.21 -0.1
147,631 + EX28DRAFT_0194 0.26 -0.2
147,631 + EX28DRAFT_0194 0.26 +0.0
147,631 + EX28DRAFT_0194 0.26 -0.6
147,632 - EX28DRAFT_0194 0.26 +0.6
147,632 - EX28DRAFT_0194 0.26 -0.2
147,827 + EX28DRAFT_0194 0.59 +0.0
147,828 - EX28DRAFT_0194 0.59 +1.0
147,828 - EX28DRAFT_0194 0.59 -0.1
147,831 + EX28DRAFT_0194 0.60 -0.5
147,831 + EX28DRAFT_0194 0.60 -0.2
147,831 + EX28DRAFT_0194 0.60 +0.1
147,832 - EX28DRAFT_0194 0.60 +0.6
147,832 - EX28DRAFT_0194 0.60 +0.3
147,881 - EX28DRAFT_0194 0.68 -0.1
147,999 + EX28DRAFT_0194 0.88 +0.4
148,067 - -0.1
148,084 + +0.3
148,092 - -0.0
148,092 - +0.2
148,128 + +0.3
148,268 - +0.5

Or see this region's nucleotide sequence