Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0176

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0175 and EX28DRAFT_0176 are separated by 146 nucleotidesEX28DRAFT_0176 and EX28DRAFT_0177 overlap by 4 nucleotidesEX28DRAFT_0177 and EX28DRAFT_0178 are separated by 18 nucleotides EX28DRAFT_0175: EX28DRAFT_0175 - phosphotransferase system, cellobiose specific, IIC component, at 124,874 to 126,193 _0175 EX28DRAFT_0176: EX28DRAFT_0176 - Homeodomain-like domain, at 126,340 to 127,164 _0176 EX28DRAFT_0177: EX28DRAFT_0177 - arsenate reductase (glutaredoxin), at 127,161 to 127,517 _0177 EX28DRAFT_0178: EX28DRAFT_0178 - Putative Zn-dependent protease, contains TPR repeats, at 127,536 to 128,999 _0178 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 125.356 kb on + strand, within EX28DRAFT_0175at 125.515 kb on - strand, within EX28DRAFT_0175at 125.557 kb on - strand, within EX28DRAFT_0175at 125.557 kb on - strand, within EX28DRAFT_0175at 125.580 kb on + strand, within EX28DRAFT_0175at 125.580 kb on + strand, within EX28DRAFT_0175at 125.581 kb on - strand, within EX28DRAFT_0175at 126.016 kb on + strand, within EX28DRAFT_0175at 126.016 kb on + strand, within EX28DRAFT_0175at 126.028 kb on - strand, within EX28DRAFT_0175at 126.099 kb on + strandat 126.232 kb on + strandat 126.499 kb on - strand, within EX28DRAFT_0176at 126.499 kb on - strand, within EX28DRAFT_0176at 126.743 kb on + strand, within EX28DRAFT_0176at 126.743 kb on + strand, within EX28DRAFT_0176at 126.744 kb on - strand, within EX28DRAFT_0176at 126.768 kb on + strand, within EX28DRAFT_0176at 126.769 kb on - strand, within EX28DRAFT_0176at 126.769 kb on - strand, within EX28DRAFT_0176at 127.162 kb on + strandat 127.162 kb on + strandat 127.314 kb on - strand, within EX28DRAFT_0177at 127.315 kb on + strand, within EX28DRAFT_0177at 127.316 kb on - strand, within EX28DRAFT_0177at 127.415 kb on - strand, within EX28DRAFT_0177at 127.534 kb on + strandat 127.537 kb on + strandat 127.537 kb on + strandat 127.538 kb on - strandat 127.538 kb on - strandat 127.538 kb on - strandat 127.781 kb on + strand, within EX28DRAFT_0178at 127.839 kb on + strand, within EX28DRAFT_0178at 127.839 kb on + strand, within EX28DRAFT_0178at 127.844 kb on - strand, within EX28DRAFT_0178at 127.859 kb on + strand, within EX28DRAFT_0178at 127.966 kb on + strand, within EX28DRAFT_0178at 127.967 kb on - strand, within EX28DRAFT_0178at 128.027 kb on - strand, within EX28DRAFT_0178at 128.146 kb on + strand, within EX28DRAFT_0178at 128.146 kb on + strand, within EX28DRAFT_0178at 128.147 kb on - strand, within EX28DRAFT_0178at 128.147 kb on - strand, within EX28DRAFT_0178

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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125,356 + EX28DRAFT_0175 0.37 +0.1
125,515 - EX28DRAFT_0175 0.49 -0.2
125,557 - EX28DRAFT_0175 0.52 +0.6
125,557 - EX28DRAFT_0175 0.52 +0.3
125,580 + EX28DRAFT_0175 0.53 +0.2
125,580 + EX28DRAFT_0175 0.53 +0.1
125,581 - EX28DRAFT_0175 0.54 +0.7
126,016 + EX28DRAFT_0175 0.87 +0.1
126,016 + EX28DRAFT_0175 0.87 +0.2
126,028 - EX28DRAFT_0175 0.87 -0.6
126,099 + -0.3
126,232 + +0.1
126,499 - EX28DRAFT_0176 0.19 +0.2
126,499 - EX28DRAFT_0176 0.19 -0.2
126,743 + EX28DRAFT_0176 0.49 -0.5
126,743 + EX28DRAFT_0176 0.49 -0.7
126,744 - EX28DRAFT_0176 0.49 -0.6
126,768 + EX28DRAFT_0176 0.52 +0.6
126,769 - EX28DRAFT_0176 0.52 +0.4
126,769 - EX28DRAFT_0176 0.52 -0.0
127,162 + -0.1
127,162 + -2.1
127,314 - EX28DRAFT_0177 0.43 +1.7
127,315 + EX28DRAFT_0177 0.43 -0.1
127,316 - EX28DRAFT_0177 0.43 +0.9
127,415 - EX28DRAFT_0177 0.71 +1.6
127,534 + -0.3
127,537 + +0.1
127,537 + -0.1
127,538 - +0.5
127,538 - +0.7
127,538 - +0.3
127,781 + EX28DRAFT_0178 0.17 -0.2
127,839 + EX28DRAFT_0178 0.21 -0.1
127,839 + EX28DRAFT_0178 0.21 -0.9
127,844 - EX28DRAFT_0178 0.21 +0.3
127,859 + EX28DRAFT_0178 0.22 -0.1
127,966 + EX28DRAFT_0178 0.29 +0.3
127,967 - EX28DRAFT_0178 0.29 -0.3
128,027 - EX28DRAFT_0178 0.34 -0.1
128,146 + EX28DRAFT_0178 0.42 +0.4
128,146 + EX28DRAFT_0178 0.42 -0.5
128,147 - EX28DRAFT_0178 0.42 +0.1
128,147 - EX28DRAFT_0178 0.42 +1.2

Or see this region's nucleotide sequence