Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0147 and EX28DRAFT_0148 are separated by 11 nucleotides EX28DRAFT_0148 and EX28DRAFT_0149 are separated by 301 nucleotides
EX28DRAFT_0147: EX28DRAFT_0147 - methylmalonic acid semialdehyde dehydrogenase, at 91,102 to 92,607
_0147
EX28DRAFT_0148: EX28DRAFT_0148 - Acetolactate synthase, at 92,619 to 94,544
_0148
EX28DRAFT_0149: EX28DRAFT_0149 - Predicted dehydrogenases and related proteins, at 94,846 to 95,832
_0149
Position (kb) 92
93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 91.802 kb on - strand, within EX28DRAFT_0147 at 91.977 kb on + strand, within EX28DRAFT_0147 at 92.113 kb on + strand, within EX28DRAFT_0147 at 92.195 kb on - strand, within EX28DRAFT_0147 at 92.195 kb on - strand, within EX28DRAFT_0147 at 92.245 kb on + strand, within EX28DRAFT_0147 at 92.245 kb on + strand, within EX28DRAFT_0147 at 92.246 kb on - strand, within EX28DRAFT_0147 at 92.246 kb on - strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.333 kb on - strand, within EX28DRAFT_0147 at 92.618 kb on + strand at 92.633 kb on + strand at 92.634 kb on - strand at 92.676 kb on + strand at 92.677 kb on - strand at 92.828 kb on + strand, within EX28DRAFT_0148 at 92.910 kb on - strand, within EX28DRAFT_0148 at 92.976 kb on + strand, within EX28DRAFT_0148 at 92.977 kb on - strand, within EX28DRAFT_0148 at 93.022 kb on - strand, within EX28DRAFT_0148 at 93.022 kb on - strand, within EX28DRAFT_0148 at 93.137 kb on + strand, within EX28DRAFT_0148 at 93.138 kb on - strand, within EX28DRAFT_0148 at 93.430 kb on + strand, within EX28DRAFT_0148 at 93.430 kb on + strand, within EX28DRAFT_0148 at 93.447 kb on - strand, within EX28DRAFT_0148 at 93.545 kb on + strand, within EX28DRAFT_0148 at 93.546 kb on - strand, within EX28DRAFT_0148 at 93.802 kb on + strand, within EX28DRAFT_0148 at 93.949 kb on + strand, within EX28DRAFT_0148 at 93.984 kb on + strand, within EX28DRAFT_0148 at 93.997 kb on - strand, within EX28DRAFT_0148 at 94.071 kb on + strand, within EX28DRAFT_0148 at 94.072 kb on - strand, within EX28DRAFT_0148 at 94.095 kb on + strand, within EX28DRAFT_0148 at 94.096 kb on - strand, within EX28DRAFT_0148 at 94.096 kb on - strand, within EX28DRAFT_0148 at 94.096 kb on - strand, within EX28DRAFT_0148 at 94.142 kb on + strand, within EX28DRAFT_0148 at 94.142 kb on + strand, within EX28DRAFT_0148 at 94.143 kb on - strand, within EX28DRAFT_0148 at 94.187 kb on + strand, within EX28DRAFT_0148 at 94.188 kb on - strand, within EX28DRAFT_0148 at 94.311 kb on + strand, within EX28DRAFT_0148 at 94.437 kb on + strand at 94.619 kb on - strand at 94.890 kb on - strand at 94.890 kb on - strand at 94.899 kb on + strand at 94.981 kb on + strand, within EX28DRAFT_0149 at 94.982 kb on - strand, within EX28DRAFT_0149 at 94.982 kb on - strand, within EX28DRAFT_0149 at 95.126 kb on + strand, within EX28DRAFT_0149 at 95.166 kb on - strand, within EX28DRAFT_0149 at 95.177 kb on - strand, within EX28DRAFT_0149 at 95.491 kb on + strand, within EX28DRAFT_0149 at 95.491 kb on + strand, within EX28DRAFT_0149
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 91,802 - EX28DRAFT_0147 0.46 -0.0 91,977 + EX28DRAFT_0147 0.58 +0.3 92,113 + EX28DRAFT_0147 0.67 +0.1 92,195 - EX28DRAFT_0147 0.73 +0.3 92,195 - EX28DRAFT_0147 0.73 -0.3 92,245 + EX28DRAFT_0147 0.76 +1.4 92,245 + EX28DRAFT_0147 0.76 -0.8 92,246 - EX28DRAFT_0147 0.76 +0.3 92,246 - EX28DRAFT_0147 0.76 -0.3 92,332 + EX28DRAFT_0147 0.82 +0.1 92,332 + EX28DRAFT_0147 0.82 +0.5 92,332 + EX28DRAFT_0147 0.82 +0.3 92,333 - EX28DRAFT_0147 0.82 +0.4 92,618 + +0.1 92,633 + -0.1 92,634 - +0.1 92,676 + +0.2 92,677 - -0.3 92,828 + EX28DRAFT_0148 0.11 +0.5 92,910 - EX28DRAFT_0148 0.15 +0.4 92,976 + EX28DRAFT_0148 0.19 -1.5 92,977 - EX28DRAFT_0148 0.19 +0.1 93,022 - EX28DRAFT_0148 0.21 +0.5 93,022 - EX28DRAFT_0148 0.21 +0.4 93,137 + EX28DRAFT_0148 0.27 +0.7 93,138 - EX28DRAFT_0148 0.27 -1.9 93,430 + EX28DRAFT_0148 0.42 -0.1 93,430 + EX28DRAFT_0148 0.42 +0.5 93,447 - EX28DRAFT_0148 0.43 +0.5 93,545 + EX28DRAFT_0148 0.48 +0.5 93,546 - EX28DRAFT_0148 0.48 +0.7 93,802 + EX28DRAFT_0148 0.61 +1.2 93,949 + EX28DRAFT_0148 0.69 -0.1 93,984 + EX28DRAFT_0148 0.71 -0.4 93,997 - EX28DRAFT_0148 0.72 +0.3 94,071 + EX28DRAFT_0148 0.75 +0.2 94,072 - EX28DRAFT_0148 0.75 +0.7 94,095 + EX28DRAFT_0148 0.77 +0.1 94,096 - EX28DRAFT_0148 0.77 -1.3 94,096 - EX28DRAFT_0148 0.77 +3.4 94,096 - EX28DRAFT_0148 0.77 -0.6 94,142 + EX28DRAFT_0148 0.79 +0.3 94,142 + EX28DRAFT_0148 0.79 +0.1 94,143 - EX28DRAFT_0148 0.79 +0.1 94,187 + EX28DRAFT_0148 0.81 +0.2 94,188 - EX28DRAFT_0148 0.81 +0.2 94,311 + EX28DRAFT_0148 0.88 +1.0 94,437 + +1.2 94,619 - +0.4 94,890 - -0.5 94,890 - -0.2 94,899 + -0.2 94,981 + EX28DRAFT_0149 0.14 +1.3 94,982 - EX28DRAFT_0149 0.14 -0.1 94,982 - EX28DRAFT_0149 0.14 -0.0 95,126 + EX28DRAFT_0149 0.28 -0.3 95,166 - EX28DRAFT_0149 0.32 -0.5 95,177 - EX28DRAFT_0149 0.34 +0.2 95,491 + EX28DRAFT_0149 0.65 +0.2 95,491 + EX28DRAFT_0149 0.65 -0.8
Or see this region's nucleotide sequence