Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0105 and EX28DRAFT_0106 are separated by 59 nucleotides EX28DRAFT_0106 and EX28DRAFT_0107 are separated by 131 nucleotides EX28DRAFT_0107 and EX28DRAFT_0108 are separated by 216 nucleotides EX28DRAFT_0108 and EX28DRAFT_0109 are separated by 6 nucleotides EX28DRAFT_0109 and EX28DRAFT_0110 are separated by 1 nucleotides
EX28DRAFT_0105: EX28DRAFT_0105 - ABC-type uncharacterized transport system, permease component, at 45,946 to 46,926
_0105
EX28DRAFT_0106: EX28DRAFT_0106 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 46,986 to 47,789
_0106
EX28DRAFT_0107: EX28DRAFT_0107 - RNA methyltransferase, TrmH family, group 1, at 47,921 to 48,646
_0107
EX28DRAFT_0108: EX28DRAFT_0108 - transcriptional regulator, BadM/Rrf2 family, at 48,863 to 49,354
_0108
EX28DRAFT_0109: EX28DRAFT_0109 - RNA, at 49,361 to 49,470
_0109
EX28DRAFT_0110: EX28DRAFT_0110 - cysteine desulfurase IscS, at 49,472 to 50,686
_0110
Position (kb) 47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 46.929 kb on + strand at 46.974 kb on + strand at 46.979 kb on - strand at 48.255 kb on + strand, within EX28DRAFT_0107 at 48.256 kb on - strand, within EX28DRAFT_0107 at 48.309 kb on - strand, within EX28DRAFT_0107 at 48.392 kb on - strand, within EX28DRAFT_0107 at 48.446 kb on + strand, within EX28DRAFT_0107 at 48.477 kb on - strand, within EX28DRAFT_0107 at 48.594 kb on + strand at 48.637 kb on + strand at 48.644 kb on + strand at 48.644 kb on + strand at 48.645 kb on - strand at 48.877 kb on + strand at 48.877 kb on + strand at 48.952 kb on + strand, within EX28DRAFT_0108
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 46,929 + -0.2 46,974 + +0.2 46,979 - +0.4 48,255 + EX28DRAFT_0107 0.46 +0.8 48,256 - EX28DRAFT_0107 0.46 -0.1 48,309 - EX28DRAFT_0107 0.53 -1.4 48,392 - EX28DRAFT_0107 0.65 +0.0 48,446 + EX28DRAFT_0107 0.72 -1.2 48,477 - EX28DRAFT_0107 0.77 -0.6 48,594 + +0.5 48,637 + +1.3 48,644 + +0.6 48,644 + +1.2 48,645 - -0.5 48,877 + -3.1 48,877 + -2.1 48,952 + EX28DRAFT_0108 0.18 -2.5
Or see this region's nucleotide sequence