Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0089

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0087 and EX28DRAFT_0088 are separated by 3 nucleotidesEX28DRAFT_0088 and EX28DRAFT_0089 are separated by 24 nucleotidesEX28DRAFT_0089 and EX28DRAFT_0090 overlap by 113 nucleotides EX28DRAFT_0087: EX28DRAFT_0087 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 26,122 to 27,483 _0087 EX28DRAFT_0088: EX28DRAFT_0088 - haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB, at 27,487 to 28,122 _0088 EX28DRAFT_0089: EX28DRAFT_0089 - Cytosine/adenosine deaminases, at 28,147 to 28,686 _0089 EX28DRAFT_0090: EX28DRAFT_0090 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 28,574 to 30,124 _0090 Position (kb) 28 29Strain fitness (log2 ratio) -1 0 1 2at 27.315 kb on + strand, within EX28DRAFT_0087at 27.316 kb on - strand, within EX28DRAFT_0087at 27.316 kb on - strand, within EX28DRAFT_0087at 27.319 kb on + strand, within EX28DRAFT_0087at 27.403 kb on + strandat 27.403 kb on + strandat 27.404 kb on - strandat 27.410 kb on + strandat 27.416 kb on - strandat 27.420 kb on - strandat 27.420 kb on - strandat 27.420 kb on - strandat 27.420 kb on - strandat 27.482 kb on - strandat 27.549 kb on + strandat 27.549 kb on + strandat 27.549 kb on + strandat 27.550 kb on - strandat 27.621 kb on - strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.697 kb on - strand, within EX28DRAFT_0088at 27.805 kb on + strand, within EX28DRAFT_0088at 28.120 kb on + strandat 28.131 kb on - strandat 28.131 kb on - strandat 28.143 kb on + strandat 28.144 kb on - strandat 28.144 kb on - strandat 28.146 kb on - strandat 28.785 kb on + strand, within EX28DRAFT_0090at 28.806 kb on + strand, within EX28DRAFT_0090at 28.807 kb on - strand, within EX28DRAFT_0090at 28.813 kb on - strand, within EX28DRAFT_0090at 28.839 kb on + strand, within EX28DRAFT_0090at 28.853 kb on - strand, within EX28DRAFT_0090at 28.853 kb on - strand, within EX28DRAFT_0090at 28.854 kb on + strand, within EX28DRAFT_0090at 28.855 kb on - strand, within EX28DRAFT_0090at 28.855 kb on - strand, within EX28DRAFT_0090at 28.915 kb on + strand, within EX28DRAFT_0090at 28.955 kb on - strand, within EX28DRAFT_0090at 28.974 kb on + strand, within EX28DRAFT_0090at 29.038 kb on + strand, within EX28DRAFT_0090at 29.039 kb on - strand, within EX28DRAFT_0090at 29.050 kb on - strand, within EX28DRAFT_0090at 29.331 kb on + strand, within EX28DRAFT_0090at 29.356 kb on + strand, within EX28DRAFT_0090at 29.529 kb on + strand, within EX28DRAFT_0090at 29.530 kb on - strand, within EX28DRAFT_0090at 29.683 kb on + strand, within EX28DRAFT_0090

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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27,315 + EX28DRAFT_0087 0.88 +0.7
27,316 - EX28DRAFT_0087 0.88 +0.1
27,316 - EX28DRAFT_0087 0.88 -0.2
27,319 + EX28DRAFT_0087 0.88 -0.2
27,403 + -0.4
27,403 + -0.2
27,404 - -0.3
27,410 + -0.8
27,416 - +0.4
27,420 - +0.3
27,420 - -0.1
27,420 - +2.4
27,420 - -0.1
27,482 - -0.1
27,549 + -0.5
27,549 + +0.1
27,549 + +0.2
27,550 - +0.1
27,621 - EX28DRAFT_0088 0.21 -1.1
27,696 + EX28DRAFT_0088 0.33 -0.1
27,696 + EX28DRAFT_0088 0.33 +0.2
27,696 + EX28DRAFT_0088 0.33 +0.1
27,696 + EX28DRAFT_0088 0.33 -0.4
27,697 - EX28DRAFT_0088 0.33 +0.7
27,805 + EX28DRAFT_0088 0.50 +0.4
28,120 + +0.6
28,131 - +0.1
28,131 - -0.8
28,143 + -0.1
28,144 - -0.4
28,144 - -1.2
28,146 - -0.0
28,785 + EX28DRAFT_0090 0.14 +0.2
28,806 + EX28DRAFT_0090 0.15 +0.2
28,807 - EX28DRAFT_0090 0.15 -0.3
28,813 - EX28DRAFT_0090 0.15 +0.4
28,839 + EX28DRAFT_0090 0.17 -0.1
28,853 - EX28DRAFT_0090 0.18 -0.0
28,853 - EX28DRAFT_0090 0.18 +0.2
28,854 + EX28DRAFT_0090 0.18 +0.1
28,855 - EX28DRAFT_0090 0.18 +0.8
28,855 - EX28DRAFT_0090 0.18 +0.2
28,915 + EX28DRAFT_0090 0.22 -0.4
28,955 - EX28DRAFT_0090 0.25 +0.2
28,974 + EX28DRAFT_0090 0.26 +0.1
29,038 + EX28DRAFT_0090 0.30 +0.4
29,039 - EX28DRAFT_0090 0.30 +0.5
29,050 - EX28DRAFT_0090 0.31 -0.1
29,331 + EX28DRAFT_0090 0.49 +0.2
29,356 + EX28DRAFT_0090 0.50 -0.1
29,529 + EX28DRAFT_0090 0.62 -0.5
29,530 - EX28DRAFT_0090 0.62 -0.1
29,683 + EX28DRAFT_0090 0.72 -0.1

Or see this region's nucleotide sequence