Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0039

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0038 and EX28DRAFT_0039 are separated by 22 nucleotidesEX28DRAFT_0039 and EX28DRAFT_0040 are separated by 76 nucleotides EX28DRAFT_0038: EX28DRAFT_0038 - K+ transport systems, NAD-binding component, at 17,653 to 19,029 _0038 EX28DRAFT_0039: EX28DRAFT_0039 - 16S rRNA (cytosine(967)-C(5))-methyltransferase, at 19,052 to 20,314 _0039 EX28DRAFT_0040: EX28DRAFT_0040 - methionyl-tRNA formyltransferase, at 20,391 to 21,338 _0040 Position (kb) 19 20 21Strain fitness (log2 ratio) -2 -1 0 1at 18.097 kb on - strand, within EX28DRAFT_0038at 18.333 kb on + strand, within EX28DRAFT_0038at 18.630 kb on - strand, within EX28DRAFT_0038at 19.227 kb on + strand, within EX28DRAFT_0039at 19.228 kb on - strand, within EX28DRAFT_0039at 19.303 kb on + strand, within EX28DRAFT_0039at 19.306 kb on + strand, within EX28DRAFT_0039at 19.307 kb on - strand, within EX28DRAFT_0039at 19.553 kb on - strand, within EX28DRAFT_0039at 19.653 kb on - strand, within EX28DRAFT_0039at 19.691 kb on + strand, within EX28DRAFT_0039at 19.715 kb on + strand, within EX28DRAFT_0039at 20.086 kb on - strand, within EX28DRAFT_0039at 20.099 kb on - strand, within EX28DRAFT_0039at 20.107 kb on - strand, within EX28DRAFT_0039at 20.112 kb on - strand, within EX28DRAFT_0039at 20.268 kb on - strandat 20.321 kb on + strandat 20.322 kb on - strandat 20.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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18,097 - EX28DRAFT_0038 0.32 -0.3
18,333 + EX28DRAFT_0038 0.49 -1.6
18,630 - EX28DRAFT_0038 0.71 -1.6
19,227 + EX28DRAFT_0039 0.14 +0.3
19,228 - EX28DRAFT_0039 0.14 -1.1
19,303 + EX28DRAFT_0039 0.20 -1.7
19,306 + EX28DRAFT_0039 0.20 -1.8
19,307 - EX28DRAFT_0039 0.20 -0.8
19,553 - EX28DRAFT_0039 0.40 -1.4
19,653 - EX28DRAFT_0039 0.48 -0.4
19,691 + EX28DRAFT_0039 0.51 +0.4
19,715 + EX28DRAFT_0039 0.52 -0.4
20,086 - EX28DRAFT_0039 0.82 -1.1
20,099 - EX28DRAFT_0039 0.83 -0.8
20,107 - EX28DRAFT_0039 0.84 -0.6
20,112 - EX28DRAFT_0039 0.84 -0.5
20,268 - -0.5
20,321 + -1.2
20,322 - -0.9
20,383 - +0.3

Or see this region's nucleotide sequence