Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0032 and EX28DRAFT_0033 are separated by 40 nucleotides EX28DRAFT_0033 and EX28DRAFT_0034 are separated by 107 nucleotides EX28DRAFT_0034 and EX28DRAFT_0035 are separated by 2 nucleotides EX28DRAFT_0035 and EX28DRAFT_0036 are separated by 57 nucleotides EX28DRAFT_0036 and EX28DRAFT_0037 are separated by 0 nucleotides
EX28DRAFT_0032: EX28DRAFT_0032 - DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6), at 14,505 to 15,494
_0032
EX28DRAFT_0033: EX28DRAFT_0033 - LSU ribosomal protein L17P, at 15,535 to 15,918
_0033
EX28DRAFT_0034: EX28DRAFT_0034 - Domain of unknown function (DUF1992), at 16,026 to 16,394
_0034
EX28DRAFT_0035: EX28DRAFT_0035 - Zn(II)-responsive transcriptional regulator, at 16,397 to 16,822
_0035
EX28DRAFT_0036: EX28DRAFT_0036 - Uncharacterized protein conserved in bacteria, at 16,880 to 17,095
_0036
EX28DRAFT_0037: EX28DRAFT_0037 - large conductance mechanosensitive channel protein, at 17,096 to 17,506
_0037
Position (kb)
16
17 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 15.960 kb on - strand at 15.985 kb on - strand at 15.985 kb on - strand at 15.996 kb on - strand at 15.999 kb on - strand at 16.059 kb on - strand at 16.153 kb on + strand, within EX28DRAFT_0034 at 16.316 kb on - strand, within EX28DRAFT_0034 at 16.393 kb on - strand at 16.396 kb on + strand at 16.396 kb on + strand at 16.397 kb on - strand at 16.397 kb on - strand at 16.397 kb on - strand at 16.397 kb on - strand at 16.400 kb on + strand at 16.400 kb on + strand at 16.455 kb on - strand, within EX28DRAFT_0035 at 16.492 kb on + strand, within EX28DRAFT_0035 at 16.493 kb on - strand, within EX28DRAFT_0035 at 16.514 kb on + strand, within EX28DRAFT_0035 at 16.515 kb on - strand, within EX28DRAFT_0035 at 16.596 kb on + strand, within EX28DRAFT_0035 at 16.597 kb on - strand, within EX28DRAFT_0035 at 16.643 kb on - strand, within EX28DRAFT_0035 at 16.643 kb on - strand, within EX28DRAFT_0035 at 16.684 kb on + strand, within EX28DRAFT_0035 at 16.685 kb on - strand, within EX28DRAFT_0035 at 16.687 kb on - strand, within EX28DRAFT_0035 at 16.828 kb on - strand at 16.880 kb on - strand at 16.912 kb on + strand, within EX28DRAFT_0036 at 16.935 kb on + strand, within EX28DRAFT_0036 at 16.935 kb on + strand, within EX28DRAFT_0036 at 17.026 kb on + strand, within EX28DRAFT_0036 at 17.061 kb on + strand, within EX28DRAFT_0036 at 17.086 kb on + strand at 17.086 kb on + strand at 17.087 kb on - strand at 17.091 kb on - strand at 17.228 kb on - strand, within EX28DRAFT_0037 at 17.228 kb on - strand, within EX28DRAFT_0037 at 17.228 kb on - strand, within EX28DRAFT_0037 at 17.262 kb on - strand, within EX28DRAFT_0037 at 17.291 kb on + strand, within EX28DRAFT_0037 at 17.291 kb on + strand, within EX28DRAFT_0037 at 17.294 kb on + strand, within EX28DRAFT_0037 at 17.295 kb on - strand, within EX28DRAFT_0037 at 17.386 kb on + strand, within EX28DRAFT_0037
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 15,960 - +0.6 15,985 - -1.3 15,985 - -0.1 15,996 - +0.0 15,999 - +0.2 16,059 - -0.5 16,153 + EX28DRAFT_0034 0.34 +0.2 16,316 - EX28DRAFT_0034 0.79 +1.0 16,393 - +0.2 16,396 + +0.4 16,396 + +2.3 16,397 - +0.6 16,397 - +0.1 16,397 - +1.1 16,397 - -0.4 16,400 + -0.2 16,400 + +0.3 16,455 - EX28DRAFT_0035 0.14 +1.5 16,492 + EX28DRAFT_0035 0.22 +0.3 16,493 - EX28DRAFT_0035 0.23 +0.6 16,514 + EX28DRAFT_0035 0.27 +0.4 16,515 - EX28DRAFT_0035 0.28 -0.1 16,596 + EX28DRAFT_0035 0.47 +0.4 16,597 - EX28DRAFT_0035 0.47 -1.0 16,643 - EX28DRAFT_0035 0.58 -0.7 16,643 - EX28DRAFT_0035 0.58 -0.1 16,684 + EX28DRAFT_0035 0.67 +0.9 16,685 - EX28DRAFT_0035 0.68 +0.0 16,687 - EX28DRAFT_0035 0.68 +0.3 16,828 - -1.0 16,880 - -0.2 16,912 + EX28DRAFT_0036 0.15 -0.0 16,935 + EX28DRAFT_0036 0.25 -0.0 16,935 + EX28DRAFT_0036 0.25 -0.2 17,026 + EX28DRAFT_0036 0.68 -0.1 17,061 + EX28DRAFT_0036 0.84 +0.0 17,086 + +1.4 17,086 + +0.3 17,087 - -0.3 17,091 - +0.3 17,228 - EX28DRAFT_0037 0.32 +0.4 17,228 - EX28DRAFT_0037 0.32 +0.2 17,228 - EX28DRAFT_0037 0.32 -0.3 17,262 - EX28DRAFT_0037 0.40 +0.3 17,291 + EX28DRAFT_0037 0.47 +0.1 17,291 + EX28DRAFT_0037 0.47 +0.2 17,294 + EX28DRAFT_0037 0.48 -2.4 17,295 - EX28DRAFT_0037 0.48 +0.7 17,386 + EX28DRAFT_0037 0.71 -0.4
Or see this region's nucleotide sequence