Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18470

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18465 and CA264_18470 are separated by 41 nucleotidesCA264_18470 and CA264_18475 are separated by 57 nucleotidesCA264_18475 and CA264_18480 are separated by 209 nucleotides CA264_18465: CA264_18465 - hypothetical protein, at 4,294,731 to 4,295,507 _18465 CA264_18470: CA264_18470 - peptidase M28, at 4,295,549 to 4,297,288 _18470 CA264_18475: CA264_18475 - very short patch repair endonuclease, at 4,297,346 to 4,297,747 _18475 CA264_18480: CA264_18480 - hypothetical protein, at 4,297,957 to 4,298,256 _18480 Position (kb) 4295 4296 4297 4298Strain fitness (log2 ratio) -2 -1 0 1 2at 4294.557 kb on + strandat 4294.558 kb on - strandat 4294.649 kb on - strandat 4294.740 kb on - strandat 4294.741 kb on + strandat 4294.771 kb on + strandat 4294.874 kb on - strand, within CA264_18465at 4294.974 kb on + strand, within CA264_18465at 4294.975 kb on - strand, within CA264_18465at 4295.014 kb on - strand, within CA264_18465at 4295.014 kb on - strand, within CA264_18465at 4295.064 kb on + strand, within CA264_18465at 4295.064 kb on + strand, within CA264_18465at 4295.065 kb on - strand, within CA264_18465at 4295.065 kb on - strand, within CA264_18465at 4295.094 kb on + strand, within CA264_18465at 4295.096 kb on + strand, within CA264_18465at 4295.169 kb on + strand, within CA264_18465at 4295.408 kb on - strand, within CA264_18465at 4295.427 kb on + strand, within CA264_18465at 4295.428 kb on - strand, within CA264_18465at 4295.436 kb on + strandat 4295.470 kb on - strandat 4295.470 kb on - strandat 4295.546 kb on + strandat 4295.550 kb on + strandat 4295.551 kb on - strandat 4295.555 kb on + strandat 4295.645 kb on - strandat 4295.774 kb on + strand, within CA264_18470at 4295.774 kb on + strand, within CA264_18470at 4295.775 kb on - strand, within CA264_18470at 4295.778 kb on + strand, within CA264_18470at 4295.778 kb on + strand, within CA264_18470at 4295.779 kb on - strand, within CA264_18470at 4295.949 kb on - strand, within CA264_18470at 4295.954 kb on - strand, within CA264_18470at 4296.067 kb on - strand, within CA264_18470at 4296.070 kb on - strand, within CA264_18470at 4296.103 kb on + strand, within CA264_18470at 4296.214 kb on - strand, within CA264_18470at 4296.271 kb on - strand, within CA264_18470at 4296.280 kb on - strand, within CA264_18470at 4296.280 kb on - strand, within CA264_18470at 4296.638 kb on + strand, within CA264_18470at 4296.651 kb on + strand, within CA264_18470at 4296.652 kb on - strand, within CA264_18470at 4296.652 kb on - strand, within CA264_18470at 4296.667 kb on - strand, within CA264_18470at 4296.670 kb on - strand, within CA264_18470at 4296.670 kb on - strand, within CA264_18470at 4296.767 kb on - strand, within CA264_18470at 4296.774 kb on - strand, within CA264_18470at 4296.830 kb on + strand, within CA264_18470at 4296.830 kb on + strand, within CA264_18470at 4296.830 kb on + strand, within CA264_18470at 4296.830 kb on + strand, within CA264_18470at 4296.831 kb on - strand, within CA264_18470at 4296.854 kb on + strand, within CA264_18470at 4296.855 kb on - strand, within CA264_18470at 4296.855 kb on - strand, within CA264_18470at 4296.855 kb on - strand, within CA264_18470at 4296.895 kb on - strand, within CA264_18470at 4296.961 kb on + strand, within CA264_18470at 4296.986 kb on + strand, within CA264_18470at 4296.987 kb on - strand, within CA264_18470at 4296.991 kb on - strand, within CA264_18470at 4296.991 kb on - strand, within CA264_18470at 4296.991 kb on - strand, within CA264_18470at 4297.147 kb on + strandat 4297.214 kb on + strandat 4297.215 kb on - strandat 4297.302 kb on - strandat 4297.315 kb on + strandat 4297.356 kb on - strandat 4297.386 kb on - strandat 4297.395 kb on - strand, within CA264_18475at 4297.395 kb on - strand, within CA264_18475at 4297.474 kb on - strand, within CA264_18475at 4297.631 kb on - strand, within CA264_18475at 4297.652 kb on - strand, within CA264_18475at 4297.709 kb on + strandat 4297.710 kb on - strandat 4297.796 kb on - strandat 4297.797 kb on + strandat 4297.892 kb on + strandat 4297.894 kb on + strandat 4297.894 kb on + strandat 4297.894 kb on + strandat 4297.894 kb on + strandat 4297.894 kb on + strandat 4297.894 kb on + strandat 4297.895 kb on - strandat 4297.895 kb on - strandat 4297.921 kb on - strandat 4297.940 kb on - strandat 4297.940 kb on - strandat 4297.970 kb on + strandat 4297.970 kb on + strandat 4298.069 kb on + strand, within CA264_18480at 4298.252 kb on + strandat 4298.252 kb on + strandat 4298.253 kb on - strandat 4298.253 kb on - strandat 4298.253 kb on - strandat 4298.253 kb on - strandat 4298.253 kb on - strandat 4298.253 kb on - strandat 4298.256 kb on + strandat 4298.256 kb on + strandat 4298.256 kb on + strandat 4298.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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4,294,557 + -0.6
4,294,558 - -1.4
4,294,649 - -0.8
4,294,740 - +0.1
4,294,741 + +0.1
4,294,771 + +0.5
4,294,874 - CA264_18465 0.18 +0.5
4,294,974 + CA264_18465 0.31 -0.3
4,294,975 - CA264_18465 0.31 -0.2
4,295,014 - CA264_18465 0.36 -0.3
4,295,014 - CA264_18465 0.36 -0.3
4,295,064 + CA264_18465 0.43 -0.8
4,295,064 + CA264_18465 0.43 +1.5
4,295,065 - CA264_18465 0.43 +0.5
4,295,065 - CA264_18465 0.43 +0.1
4,295,094 + CA264_18465 0.47 +1.0
4,295,096 + CA264_18465 0.47 -0.6
4,295,169 + CA264_18465 0.56 +0.1
4,295,408 - CA264_18465 0.87 +0.7
4,295,427 + CA264_18465 0.90 +2.0
4,295,428 - CA264_18465 0.90 -0.6
4,295,436 + +0.2
4,295,470 - +1.7
4,295,470 - -0.3
4,295,546 + -0.1
4,295,550 + +0.5
4,295,551 - -0.2
4,295,555 + -0.3
4,295,645 - -0.0
4,295,774 + CA264_18470 0.13 -0.3
4,295,774 + CA264_18470 0.13 -0.3
4,295,775 - CA264_18470 0.13 +1.1
4,295,778 + CA264_18470 0.13 +0.3
4,295,778 + CA264_18470 0.13 -0.8
4,295,779 - CA264_18470 0.13 +0.2
4,295,949 - CA264_18470 0.23 -0.4
4,295,954 - CA264_18470 0.23 +0.4
4,296,067 - CA264_18470 0.30 +0.3
4,296,070 - CA264_18470 0.30 -0.1
4,296,103 + CA264_18470 0.32 +0.6
4,296,214 - CA264_18470 0.38 -1.0
4,296,271 - CA264_18470 0.41 +0.7
4,296,280 - CA264_18470 0.42 -1.1
4,296,280 - CA264_18470 0.42 -0.3
4,296,638 + CA264_18470 0.63 +0.3
4,296,651 + CA264_18470 0.63 -0.1
4,296,652 - CA264_18470 0.63 -1.0
4,296,652 - CA264_18470 0.63 +0.7
4,296,667 - CA264_18470 0.64 -0.2
4,296,670 - CA264_18470 0.64 +0.8
4,296,670 - CA264_18470 0.64 +0.0
4,296,767 - CA264_18470 0.70 +0.2
4,296,774 - CA264_18470 0.70 -0.1
4,296,830 + CA264_18470 0.74 +0.2
4,296,830 + CA264_18470 0.74 +1.4
4,296,830 + CA264_18470 0.74 +0.6
4,296,830 + CA264_18470 0.74 +0.6
4,296,831 - CA264_18470 0.74 +0.4
4,296,854 + CA264_18470 0.75 +0.8
4,296,855 - CA264_18470 0.75 -0.3
4,296,855 - CA264_18470 0.75 +0.2
4,296,855 - CA264_18470 0.75 -0.3
4,296,895 - CA264_18470 0.77 +0.6
4,296,961 + CA264_18470 0.81 -0.2
4,296,986 + CA264_18470 0.83 +1.1
4,296,987 - CA264_18470 0.83 +0.9
4,296,991 - CA264_18470 0.83 -1.0
4,296,991 - CA264_18470 0.83 +0.0
4,296,991 - CA264_18470 0.83 +0.1
4,297,147 + -0.1
4,297,214 + -1.0
4,297,215 - -0.3
4,297,302 - +0.1
4,297,315 + -2.2
4,297,356 - +1.5
4,297,386 - -0.7
4,297,395 - CA264_18475 0.12 +0.2
4,297,395 - CA264_18475 0.12 +0.1
4,297,474 - CA264_18475 0.32 -0.8
4,297,631 - CA264_18475 0.71 -0.2
4,297,652 - CA264_18475 0.76 -0.3
4,297,709 + +0.1
4,297,710 - -0.7
4,297,796 - -1.4
4,297,797 + +0.1
4,297,892 + -1.9
4,297,894 + -0.5
4,297,894 + +0.7
4,297,894 + +0.8
4,297,894 + -0.3
4,297,894 + -0.2
4,297,894 + +0.1
4,297,895 - -1.3
4,297,895 - +1.4
4,297,921 - -0.2
4,297,940 - -0.1
4,297,940 - -0.3
4,297,970 + +0.3
4,297,970 + -0.9
4,298,069 + CA264_18480 0.37 +0.3
4,298,252 + -0.3
4,298,252 + -0.1
4,298,253 - -0.1
4,298,253 - +0.4
4,298,253 - +0.1
4,298,253 - +0.6
4,298,253 - -0.7
4,298,253 - +0.7
4,298,256 + -0.4
4,298,256 + +0.7
4,298,256 + -0.4
4,298,257 - +1.4

Or see this region's nucleotide sequence