Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15205

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15200 and CA264_15205 are separated by 104 nucleotidesCA264_15205 and CA264_15210 are separated by 76 nucleotidesCA264_15210 and CA264_15215 are separated by 29 nucleotides CA264_15200: CA264_15200 - hypothetical protein, at 3,560,550 to 3,562,193 _15200 CA264_15205: CA264_15205 - RNA pseudouridine synthase, at 3,562,298 to 3,563,332 _15205 CA264_15210: CA264_15210 - outer membrane chaperone Skp, at 3,563,409 to 3,564,017 _15210 CA264_15215: CA264_15215 - hypothetical protein, at 3,564,047 to 3,564,712 _15215 Position (kb) 3562 3563 3564Strain fitness (log2 ratio) -2 -1 0 1 2at 3561.323 kb on - strand, within CA264_15200at 3561.565 kb on - strand, within CA264_15200at 3561.699 kb on - strand, within CA264_15200at 3561.717 kb on - strand, within CA264_15200at 3561.735 kb on - strand, within CA264_15200at 3561.769 kb on - strand, within CA264_15200at 3561.769 kb on - strand, within CA264_15200at 3561.771 kb on + strand, within CA264_15200at 3561.774 kb on + strand, within CA264_15200at 3561.782 kb on + strand, within CA264_15200at 3561.789 kb on + strand, within CA264_15200at 3561.789 kb on + strand, within CA264_15200at 3561.790 kb on - strand, within CA264_15200at 3561.791 kb on + strand, within CA264_15200at 3561.792 kb on - strand, within CA264_15200at 3561.871 kb on - strand, within CA264_15200at 3561.901 kb on - strand, within CA264_15200at 3561.907 kb on - strand, within CA264_15200at 3561.979 kb on - strand, within CA264_15200at 3561.982 kb on - strand, within CA264_15200at 3562.063 kb on - strandat 3562.066 kb on - strandat 3562.066 kb on - strandat 3562.072 kb on - strandat 3562.209 kb on - strandat 3562.209 kb on - strandat 3562.213 kb on + strandat 3562.316 kb on + strandat 3562.470 kb on + strand, within CA264_15205at 3562.512 kb on + strand, within CA264_15205at 3562.513 kb on - strand, within CA264_15205at 3562.612 kb on - strand, within CA264_15205at 3562.612 kb on - strand, within CA264_15205at 3562.677 kb on - strand, within CA264_15205at 3562.723 kb on + strand, within CA264_15205at 3562.767 kb on + strand, within CA264_15205at 3562.770 kb on + strand, within CA264_15205at 3562.770 kb on + strand, within CA264_15205at 3562.950 kb on - strand, within CA264_15205at 3562.969 kb on + strand, within CA264_15205at 3562.971 kb on + strand, within CA264_15205at 3562.972 kb on - strand, within CA264_15205at 3563.121 kb on - strand, within CA264_15205at 3563.186 kb on + strand, within CA264_15205at 3563.186 kb on + strand, within CA264_15205at 3563.187 kb on - strand, within CA264_15205at 3563.372 kb on + strandat 3563.411 kb on - strandat 3563.411 kb on - strandat 3564.030 kb on + strandat 3564.031 kb on - strandat 3564.034 kb on - strandat 3564.036 kb on + strandat 3564.036 kb on + strandat 3564.037 kb on - strandat 3564.038 kb on + strandat 3564.039 kb on - strandat 3564.040 kb on + strandat 3564.187 kb on + strand, within CA264_15215at 3564.258 kb on + strand, within CA264_15215at 3564.286 kb on - strand, within CA264_15215at 3564.326 kb on + strand, within CA264_15215

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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3,561,323 - CA264_15200 0.47 +0.1
3,561,565 - CA264_15200 0.62 -0.2
3,561,699 - CA264_15200 0.70 +2.2
3,561,717 - CA264_15200 0.71 +0.4
3,561,735 - CA264_15200 0.72 +0.0
3,561,769 - CA264_15200 0.74 +0.2
3,561,769 - CA264_15200 0.74 -0.3
3,561,771 + CA264_15200 0.74 -0.0
3,561,774 + CA264_15200 0.74 -1.0
3,561,782 + CA264_15200 0.75 -0.7
3,561,789 + CA264_15200 0.75 -0.6
3,561,789 + CA264_15200 0.75 +0.2
3,561,790 - CA264_15200 0.75 -0.2
3,561,791 + CA264_15200 0.75 -0.4
3,561,792 - CA264_15200 0.76 +0.5
3,561,871 - CA264_15200 0.80 -0.2
3,561,901 - CA264_15200 0.82 +0.4
3,561,907 - CA264_15200 0.83 -0.1
3,561,979 - CA264_15200 0.87 +0.5
3,561,982 - CA264_15200 0.87 -0.2
3,562,063 - -0.2
3,562,066 - -0.1
3,562,066 - +0.4
3,562,072 - -0.2
3,562,209 - -0.8
3,562,209 - -0.1
3,562,213 + +0.3
3,562,316 + -0.8
3,562,470 + CA264_15205 0.17 -0.4
3,562,512 + CA264_15205 0.21 -0.5
3,562,513 - CA264_15205 0.21 +0.6
3,562,612 - CA264_15205 0.30 -1.0
3,562,612 - CA264_15205 0.30 +0.5
3,562,677 - CA264_15205 0.37 +1.2
3,562,723 + CA264_15205 0.41 +0.4
3,562,767 + CA264_15205 0.45 -0.5
3,562,770 + CA264_15205 0.46 -1.0
3,562,770 + CA264_15205 0.46 -0.7
3,562,950 - CA264_15205 0.63 -0.4
3,562,969 + CA264_15205 0.65 -1.6
3,562,971 + CA264_15205 0.65 -1.4
3,562,972 - CA264_15205 0.65 -0.1
3,563,121 - CA264_15205 0.80 -0.5
3,563,186 + CA264_15205 0.86 -0.6
3,563,186 + CA264_15205 0.86 -0.5
3,563,187 - CA264_15205 0.86 +0.3
3,563,372 + -1.0
3,563,411 - +0.3
3,563,411 - -0.7
3,564,030 + -1.9
3,564,031 - -1.0
3,564,034 - -0.4
3,564,036 + -0.4
3,564,036 + -0.5
3,564,037 - +1.3
3,564,038 + -0.0
3,564,039 - -0.2
3,564,040 + -0.2
3,564,187 + CA264_15215 0.21 -0.8
3,564,258 + CA264_15215 0.32 -0.3
3,564,286 - CA264_15215 0.36 -0.9
3,564,326 + CA264_15215 0.42 -1.0

Or see this region's nucleotide sequence