Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11300

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11295 and CA264_11300 are separated by 616 nucleotidesCA264_11300 and CA264_11305 are separated by 151 nucleotidesCA264_11305 and CA264_11310 are separated by 81 nucleotides CA264_11295: CA264_11295 - hypothetical protein, at 2,614,127 to 2,614,855 _11295 CA264_11300: CA264_11300 - mechanosensitive ion channel protein MscS, at 2,615,472 to 2,617,265 _11300 CA264_11305: CA264_11305 - transcriptional regulator, at 2,617,417 to 2,618,181 _11305 CA264_11310: CA264_11310 - sialate O-acetylesterase, at 2,618,263 to 2,618,964 _11310 Position (kb) 2615 2616 2617 2618Strain fitness (log2 ratio) -2 -1 0 1at 2614.476 kb on + strand, within CA264_11295at 2614.492 kb on + strand, within CA264_11295at 2614.507 kb on - strand, within CA264_11295at 2614.660 kb on + strand, within CA264_11295at 2614.669 kb on + strand, within CA264_11295at 2614.677 kb on + strand, within CA264_11295at 2614.678 kb on - strand, within CA264_11295at 2614.691 kb on + strand, within CA264_11295at 2614.692 kb on - strand, within CA264_11295at 2614.696 kb on + strand, within CA264_11295at 2614.697 kb on - strand, within CA264_11295at 2614.772 kb on + strand, within CA264_11295at 2614.772 kb on + strand, within CA264_11295at 2614.772 kb on + strand, within CA264_11295at 2614.773 kb on - strand, within CA264_11295at 2614.773 kb on - strand, within CA264_11295at 2614.775 kb on - strand, within CA264_11295at 2614.775 kb on - strand, within CA264_11295at 2614.798 kb on - strandat 2614.816 kb on + strandat 2614.843 kb on + strandat 2614.844 kb on - strandat 2614.853 kb on + strandat 2614.876 kb on - strandat 2614.879 kb on + strandat 2614.879 kb on + strandat 2615.004 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.033 kb on + strandat 2615.038 kb on + strandat 2615.039 kb on - strandat 2615.045 kb on + strandat 2615.141 kb on + strandat 2615.141 kb on + strandat 2615.217 kb on + strandat 2615.243 kb on - strandat 2615.243 kb on - strandat 2615.245 kb on - strandat 2615.272 kb on - strandat 2615.272 kb on - strandat 2615.401 kb on - strandat 2615.401 kb on - strandat 2615.401 kb on - strandat 2615.404 kb on + strandat 2615.404 kb on + strandat 2615.405 kb on - strandat 2615.405 kb on - strandat 2615.478 kb on + strandat 2615.702 kb on + strand, within CA264_11300at 2615.719 kb on + strand, within CA264_11300at 2615.808 kb on + strand, within CA264_11300at 2615.825 kb on - strand, within CA264_11300at 2615.834 kb on + strand, within CA264_11300at 2616.082 kb on + strand, within CA264_11300at 2616.083 kb on - strand, within CA264_11300at 2616.103 kb on + strand, within CA264_11300at 2616.103 kb on + strand, within CA264_11300at 2616.123 kb on + strand, within CA264_11300at 2616.180 kb on + strand, within CA264_11300at 2616.181 kb on - strand, within CA264_11300at 2616.181 kb on - strand, within CA264_11300at 2616.214 kb on + strand, within CA264_11300at 2616.269 kb on - strand, within CA264_11300at 2616.297 kb on - strand, within CA264_11300at 2616.323 kb on - strand, within CA264_11300at 2616.328 kb on + strand, within CA264_11300at 2616.484 kb on + strand, within CA264_11300at 2616.550 kb on + strand, within CA264_11300at 2616.550 kb on + strand, within CA264_11300at 2616.618 kb on - strand, within CA264_11300at 2616.688 kb on + strand, within CA264_11300at 2616.725 kb on + strand, within CA264_11300at 2616.764 kb on + strand, within CA264_11300at 2616.778 kb on - strand, within CA264_11300at 2616.852 kb on + strand, within CA264_11300at 2616.935 kb on - strand, within CA264_11300at 2617.024 kb on + strand, within CA264_11300at 2617.024 kb on + strand, within CA264_11300at 2617.086 kb on + strandat 2617.182 kb on - strandat 2617.288 kb on - strandat 2617.327 kb on - strandat 2617.327 kb on - strandat 2617.327 kb on - strandat 2617.338 kb on - strandat 2617.357 kb on + strandat 2617.374 kb on - strandat 2617.375 kb on + strandat 2617.376 kb on - strandat 2617.391 kb on + strandat 2617.391 kb on + strandat 2617.391 kb on + strandat 2617.421 kb on + strandat 2617.428 kb on - strandat 2617.506 kb on - strand, within CA264_11305at 2617.538 kb on + strand, within CA264_11305at 2617.539 kb on - strand, within CA264_11305at 2617.555 kb on - strand, within CA264_11305at 2617.604 kb on - strand, within CA264_11305at 2617.640 kb on + strand, within CA264_11305at 2617.640 kb on + strand, within CA264_11305at 2617.704 kb on + strand, within CA264_11305at 2617.751 kb on + strand, within CA264_11305at 2617.751 kb on + strand, within CA264_11305at 2617.752 kb on - strand, within CA264_11305at 2617.780 kb on - strand, within CA264_11305at 2617.897 kb on - strand, within CA264_11305at 2618.132 kb on - strandat 2618.202 kb on - strandat 2618.219 kb on + strandat 2618.230 kb on - strandat 2618.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,614,476 + CA264_11295 0.48 -0.5
2,614,492 + CA264_11295 0.50 -0.8
2,614,507 - CA264_11295 0.52 +0.4
2,614,660 + CA264_11295 0.73 -0.4
2,614,669 + CA264_11295 0.74 -0.2
2,614,677 + CA264_11295 0.75 -0.2
2,614,678 - CA264_11295 0.76 -1.0
2,614,691 + CA264_11295 0.77 +0.3
2,614,692 - CA264_11295 0.78 -0.7
2,614,696 + CA264_11295 0.78 +0.2
2,614,697 - CA264_11295 0.78 -1.0
2,614,772 + CA264_11295 0.88 +0.2
2,614,772 + CA264_11295 0.88 -0.4
2,614,772 + CA264_11295 0.88 -1.1
2,614,773 - CA264_11295 0.89 +0.8
2,614,773 - CA264_11295 0.89 -0.6
2,614,775 - CA264_11295 0.89 -0.1
2,614,775 - CA264_11295 0.89 -2.0
2,614,798 - +1.6
2,614,816 + +0.1
2,614,843 + -0.2
2,614,844 - -0.4
2,614,853 + -0.9
2,614,876 - -1.2
2,614,879 + -0.7
2,614,879 + -0.4
2,615,004 + -0.3
2,615,028 + -0.6
2,615,028 + -0.6
2,615,028 + -0.2
2,615,028 + +1.1
2,615,028 + +0.4
2,615,028 + +0.9
2,615,029 - +0.6
2,615,029 - -0.3
2,615,029 - -0.4
2,615,029 - -0.1
2,615,029 - -0.1
2,615,029 - -0.5
2,615,033 + -0.2
2,615,038 + +0.1
2,615,039 - -0.2
2,615,045 + +1.0
2,615,141 + -0.1
2,615,141 + +0.1
2,615,217 + +0.0
2,615,243 - -0.8
2,615,243 - -0.3
2,615,245 - -0.5
2,615,272 - +0.8
2,615,272 - +1.4
2,615,401 - -0.5
2,615,401 - -1.1
2,615,401 - +1.0
2,615,404 + -0.4
2,615,404 + -0.1
2,615,405 - +0.1
2,615,405 - -1.6
2,615,478 + -2.5
2,615,702 + CA264_11300 0.13 -1.8
2,615,719 + CA264_11300 0.14 -0.1
2,615,808 + CA264_11300 0.19 -0.2
2,615,825 - CA264_11300 0.20 +0.4
2,615,834 + CA264_11300 0.20 -0.4
2,616,082 + CA264_11300 0.34 -0.7
2,616,083 - CA264_11300 0.34 -0.2
2,616,103 + CA264_11300 0.35 +0.5
2,616,103 + CA264_11300 0.35 +0.1
2,616,123 + CA264_11300 0.36 +0.3
2,616,180 + CA264_11300 0.39 -0.4
2,616,181 - CA264_11300 0.40 -0.6
2,616,181 - CA264_11300 0.40 -0.5
2,616,214 + CA264_11300 0.41 -0.4
2,616,269 - CA264_11300 0.44 -0.2
2,616,297 - CA264_11300 0.46 -0.4
2,616,323 - CA264_11300 0.47 -1.0
2,616,328 + CA264_11300 0.48 -0.1
2,616,484 + CA264_11300 0.56 -0.6
2,616,550 + CA264_11300 0.60 -1.3
2,616,550 + CA264_11300 0.60 +0.5
2,616,618 - CA264_11300 0.64 +0.7
2,616,688 + CA264_11300 0.68 -0.5
2,616,725 + CA264_11300 0.70 +0.1
2,616,764 + CA264_11300 0.72 +0.4
2,616,778 - CA264_11300 0.73 -0.4
2,616,852 + CA264_11300 0.77 -0.4
2,616,935 - CA264_11300 0.82 +0.5
2,617,024 + CA264_11300 0.87 +0.4
2,617,024 + CA264_11300 0.87 -0.1
2,617,086 + -0.7
2,617,182 - +0.4
2,617,288 - +0.6
2,617,327 - -0.2
2,617,327 - -0.9
2,617,327 - -0.2
2,617,338 - +0.6
2,617,357 + -1.1
2,617,374 - -0.2
2,617,375 + -2.0
2,617,376 - -0.1
2,617,391 + -0.4
2,617,391 + -0.3
2,617,391 + -0.4
2,617,421 + -0.5
2,617,428 - -0.1
2,617,506 - CA264_11305 0.12 -0.7
2,617,538 + CA264_11305 0.16 +0.6
2,617,539 - CA264_11305 0.16 -0.3
2,617,555 - CA264_11305 0.18 -0.3
2,617,604 - CA264_11305 0.24 -0.6
2,617,640 + CA264_11305 0.29 +0.6
2,617,640 + CA264_11305 0.29 -0.3
2,617,704 + CA264_11305 0.38 -0.2
2,617,751 + CA264_11305 0.44 +0.2
2,617,751 + CA264_11305 0.44 +0.8
2,617,752 - CA264_11305 0.44 -0.4
2,617,780 - CA264_11305 0.47 -0.5
2,617,897 - CA264_11305 0.63 -0.5
2,618,132 - +0.5
2,618,202 - +1.0
2,618,219 + -0.5
2,618,230 - -0.1
2,618,230 - -0.1

Or see this region's nucleotide sequence