Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11295

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11290 and CA264_11295 are separated by 366 nucleotidesCA264_11295 and CA264_11300 are separated by 616 nucleotides CA264_11290: CA264_11290 - NADH pyrophosphatase, at 2,612,837 to 2,613,760 _11290 CA264_11295: CA264_11295 - hypothetical protein, at 2,614,127 to 2,614,855 _11295 CA264_11300: CA264_11300 - mechanosensitive ion channel protein MscS, at 2,615,472 to 2,617,265 _11300 Position (kb) 2614 2615Strain fitness (log2 ratio) -3 -2 -1 0 1at 2613.192 kb on + strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.250 kb on + strand, within CA264_11290at 2613.254 kb on + strand, within CA264_11290at 2613.310 kb on + strand, within CA264_11290at 2613.342 kb on + strand, within CA264_11290at 2613.343 kb on - strand, within CA264_11290at 2613.347 kb on - strand, within CA264_11290at 2613.347 kb on - strand, within CA264_11290at 2613.552 kb on + strand, within CA264_11290at 2613.641 kb on + strand, within CA264_11290at 2613.641 kb on + strand, within CA264_11290at 2613.642 kb on - strand, within CA264_11290at 2613.642 kb on - strand, within CA264_11290at 2613.663 kb on - strand, within CA264_11290at 2613.735 kb on - strandat 2613.735 kb on - strandat 2613.764 kb on - strandat 2613.776 kb on - strandat 2613.776 kb on - strandat 2613.807 kb on + strandat 2613.866 kb on + strandat 2613.876 kb on + strandat 2613.877 kb on - strandat 2613.877 kb on - strandat 2613.880 kb on + strandat 2613.881 kb on - strandat 2613.882 kb on + strandat 2613.891 kb on - strandat 2613.912 kb on - strandat 2613.952 kb on - strandat 2613.976 kb on - strandat 2613.976 kb on - strandat 2613.976 kb on - strandat 2613.999 kb on + strandat 2614.000 kb on - strandat 2614.091 kb on - strandat 2614.106 kb on + strandat 2614.108 kb on + strandat 2614.109 kb on - strandat 2614.173 kb on + strandat 2614.173 kb on + strandat 2614.173 kb on + strandat 2614.174 kb on - strandat 2614.180 kb on + strandat 2614.181 kb on - strandat 2614.211 kb on - strand, within CA264_11295at 2614.211 kb on - strand, within CA264_11295at 2614.253 kb on + strand, within CA264_11295at 2614.254 kb on - strand, within CA264_11295at 2614.254 kb on - strand, within CA264_11295at 2614.279 kb on + strand, within CA264_11295at 2614.337 kb on - strand, within CA264_11295at 2614.384 kb on + strand, within CA264_11295at 2614.406 kb on - strand, within CA264_11295at 2614.425 kb on + strand, within CA264_11295at 2614.426 kb on - strand, within CA264_11295at 2614.460 kb on + strand, within CA264_11295at 2614.461 kb on - strand, within CA264_11295at 2614.476 kb on + strand, within CA264_11295at 2614.492 kb on + strand, within CA264_11295at 2614.507 kb on - strand, within CA264_11295at 2614.660 kb on + strand, within CA264_11295at 2614.669 kb on + strand, within CA264_11295at 2614.677 kb on + strand, within CA264_11295at 2614.678 kb on - strand, within CA264_11295at 2614.691 kb on + strand, within CA264_11295at 2614.692 kb on - strand, within CA264_11295at 2614.696 kb on + strand, within CA264_11295at 2614.697 kb on - strand, within CA264_11295at 2614.772 kb on + strand, within CA264_11295at 2614.772 kb on + strand, within CA264_11295at 2614.772 kb on + strand, within CA264_11295at 2614.773 kb on - strand, within CA264_11295at 2614.773 kb on - strand, within CA264_11295at 2614.775 kb on - strand, within CA264_11295at 2614.775 kb on - strand, within CA264_11295at 2614.798 kb on - strandat 2614.816 kb on + strandat 2614.843 kb on + strandat 2614.844 kb on - strandat 2614.853 kb on + strandat 2614.876 kb on - strandat 2614.879 kb on + strandat 2614.879 kb on + strandat 2615.004 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.028 kb on + strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.029 kb on - strandat 2615.033 kb on + strandat 2615.038 kb on + strandat 2615.039 kb on - strandat 2615.045 kb on + strandat 2615.141 kb on + strandat 2615.141 kb on + strandat 2615.217 kb on + strandat 2615.243 kb on - strandat 2615.243 kb on - strandat 2615.245 kb on - strandat 2615.272 kb on - strandat 2615.272 kb on - strandat 2615.401 kb on - strandat 2615.401 kb on - strandat 2615.401 kb on - strandat 2615.404 kb on + strandat 2615.404 kb on + strandat 2615.405 kb on - strandat 2615.405 kb on - strandat 2615.478 kb on + strandat 2615.702 kb on + strand, within CA264_11300at 2615.719 kb on + strand, within CA264_11300at 2615.808 kb on + strand, within CA264_11300at 2615.825 kb on - strand, within CA264_11300at 2615.834 kb on + strand, within CA264_11300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,613,192 + CA264_11290 0.38 -0.4
2,613,193 - CA264_11290 0.39 +0.3
2,613,193 - CA264_11290 0.39 +0.3
2,613,193 - CA264_11290 0.39 -0.2
2,613,193 - CA264_11290 0.39 +0.3
2,613,193 - CA264_11290 0.39 +0.0
2,613,193 - CA264_11290 0.39 +0.1
2,613,250 + CA264_11290 0.45 -0.2
2,613,254 + CA264_11290 0.45 +0.6
2,613,310 + CA264_11290 0.51 +0.8
2,613,342 + CA264_11290 0.55 +0.1
2,613,343 - CA264_11290 0.55 +0.2
2,613,347 - CA264_11290 0.55 +0.2
2,613,347 - CA264_11290 0.55 +0.2
2,613,552 + CA264_11290 0.77 -0.3
2,613,641 + CA264_11290 0.87 -0.6
2,613,641 + CA264_11290 0.87 +0.1
2,613,642 - CA264_11290 0.87 -0.2
2,613,642 - CA264_11290 0.87 -1.0
2,613,663 - CA264_11290 0.89 -0.5
2,613,735 - -0.6
2,613,735 - +0.5
2,613,764 - -0.4
2,613,776 - +0.6
2,613,776 - -0.7
2,613,807 + +0.1
2,613,866 + +0.5
2,613,876 + -0.5
2,613,877 - -2.0
2,613,877 - -0.8
2,613,880 + +0.0
2,613,881 - -1.6
2,613,882 + +0.6
2,613,891 - -0.1
2,613,912 - -1.2
2,613,952 - -0.9
2,613,976 - -2.8
2,613,976 - +0.1
2,613,976 - -0.2
2,613,999 + -0.2
2,614,000 - -0.8
2,614,091 - -0.7
2,614,106 + -0.0
2,614,108 + -0.5
2,614,109 - -0.4
2,614,173 + -0.6
2,614,173 + -0.0
2,614,173 + +0.2
2,614,174 - -0.5
2,614,180 + -0.3
2,614,181 - +0.1
2,614,211 - CA264_11295 0.12 -0.2
2,614,211 - CA264_11295 0.12 +1.4
2,614,253 + CA264_11295 0.17 -0.1
2,614,254 - CA264_11295 0.17 +0.4
2,614,254 - CA264_11295 0.17 +0.0
2,614,279 + CA264_11295 0.21 -0.7
2,614,337 - CA264_11295 0.29 +0.4
2,614,384 + CA264_11295 0.35 +0.2
2,614,406 - CA264_11295 0.38 +0.1
2,614,425 + CA264_11295 0.41 -0.3
2,614,426 - CA264_11295 0.41 -0.5
2,614,460 + CA264_11295 0.46 +0.6
2,614,461 - CA264_11295 0.46 -0.3
2,614,476 + CA264_11295 0.48 -0.5
2,614,492 + CA264_11295 0.50 -0.8
2,614,507 - CA264_11295 0.52 +0.4
2,614,660 + CA264_11295 0.73 -0.4
2,614,669 + CA264_11295 0.74 -0.2
2,614,677 + CA264_11295 0.75 -0.2
2,614,678 - CA264_11295 0.76 -1.0
2,614,691 + CA264_11295 0.77 +0.3
2,614,692 - CA264_11295 0.78 -0.7
2,614,696 + CA264_11295 0.78 +0.2
2,614,697 - CA264_11295 0.78 -1.0
2,614,772 + CA264_11295 0.88 +0.2
2,614,772 + CA264_11295 0.88 -0.4
2,614,772 + CA264_11295 0.88 -1.1
2,614,773 - CA264_11295 0.89 +0.8
2,614,773 - CA264_11295 0.89 -0.6
2,614,775 - CA264_11295 0.89 -0.1
2,614,775 - CA264_11295 0.89 -2.0
2,614,798 - +1.6
2,614,816 + +0.1
2,614,843 + -0.2
2,614,844 - -0.4
2,614,853 + -0.9
2,614,876 - -1.2
2,614,879 + -0.7
2,614,879 + -0.4
2,615,004 + -0.3
2,615,028 + -0.6
2,615,028 + -0.6
2,615,028 + -0.2
2,615,028 + +1.1
2,615,028 + +0.4
2,615,028 + +0.9
2,615,029 - +0.6
2,615,029 - -0.3
2,615,029 - -0.4
2,615,029 - -0.1
2,615,029 - -0.1
2,615,029 - -0.5
2,615,033 + -0.2
2,615,038 + +0.1
2,615,039 - -0.2
2,615,045 + +1.0
2,615,141 + -0.1
2,615,141 + +0.1
2,615,217 + +0.0
2,615,243 - -0.8
2,615,243 - -0.3
2,615,245 - -0.5
2,615,272 - +0.8
2,615,272 - +1.4
2,615,401 - -0.5
2,615,401 - -1.1
2,615,401 - +1.0
2,615,404 + -0.4
2,615,404 + -0.1
2,615,405 - +0.1
2,615,405 - -1.6
2,615,478 + -2.5
2,615,702 + CA264_11300 0.13 -1.8
2,615,719 + CA264_11300 0.14 -0.1
2,615,808 + CA264_11300 0.19 -0.2
2,615,825 - CA264_11300 0.20 +0.4
2,615,834 + CA264_11300 0.20 -0.4

Or see this region's nucleotide sequence