Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10160

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10155 and CA264_10160 are separated by 917 nucleotides CA264_10155: CA264_10155 - hypothetical protein, at 2,356,507 to 2,358,483 _10155 CA264_10160: CA264_10160 - STAS/SEC14 domain-containing protein, at 2,359,401 to 2,359,814 _10160 Position (kb) 2359 2360Strain fitness (log2 ratio) -2 -1 0 1 2at 2358.498 kb on - strandat 2358.498 kb on - strandat 2358.512 kb on + strandat 2358.614 kb on + strandat 2358.614 kb on + strandat 2358.615 kb on - strandat 2358.617 kb on + strandat 2358.640 kb on + strandat 2358.676 kb on + strandat 2358.677 kb on - strandat 2358.683 kb on + strandat 2358.684 kb on - strandat 2358.687 kb on - strandat 2358.740 kb on - strandat 2358.743 kb on + strandat 2358.743 kb on + strandat 2358.744 kb on - strandat 2358.792 kb on - strandat 2358.816 kb on + strandat 2358.844 kb on + strandat 2358.845 kb on - strandat 2358.868 kb on - strandat 2358.869 kb on + strandat 2358.869 kb on + strandat 2358.870 kb on - strandat 2358.870 kb on - strandat 2358.886 kb on - strandat 2358.948 kb on - strandat 2358.948 kb on - strandat 2358.951 kb on + strandat 2358.952 kb on - strandat 2358.954 kb on + strandat 2359.050 kb on + strandat 2359.051 kb on - strandat 2359.065 kb on + strandat 2359.065 kb on + strandat 2359.066 kb on - strandat 2359.103 kb on - strandat 2359.122 kb on - strandat 2359.146 kb on + strandat 2359.146 kb on + strandat 2359.147 kb on - strandat 2359.149 kb on + strandat 2359.149 kb on + strandat 2359.180 kb on - strandat 2359.187 kb on - strandat 2359.188 kb on + strandat 2359.188 kb on + strandat 2359.189 kb on - strandat 2359.189 kb on - strandat 2359.190 kb on + strandat 2359.190 kb on + strandat 2359.190 kb on + strandat 2359.190 kb on + strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.191 kb on - strandat 2359.209 kb on - strandat 2359.209 kb on - strandat 2359.299 kb on - strandat 2359.352 kb on + strandat 2359.377 kb on + strandat 2359.378 kb on - strandat 2359.415 kb on + strandat 2359.421 kb on + strandat 2359.453 kb on + strand, within CA264_10160at 2359.474 kb on + strand, within CA264_10160at 2359.570 kb on + strand, within CA264_10160at 2359.789 kb on + strandat 2359.812 kb on + strandat 2359.828 kb on - strandat 2359.828 kb on - strandat 2359.832 kb on - strandat 2359.925 kb on + strandat 2360.002 kb on - strandat 2360.002 kb on - strandat 2360.032 kb on - strandat 2360.141 kb on - strandat 2360.141 kb on - strandat 2360.184 kb on - strandat 2360.197 kb on - strandat 2360.218 kb on - strandat 2360.249 kb on + strandat 2360.250 kb on - strandat 2360.280 kb on - strandat 2360.289 kb on - strandat 2360.346 kb on + strandat 2360.347 kb on - strandat 2360.370 kb on + strandat 2360.373 kb on + strandat 2360.374 kb on - strandat 2360.374 kb on - strandat 2360.378 kb on - strandat 2360.400 kb on - strandat 2360.432 kb on + strandat 2360.432 kb on + strandat 2360.464 kb on + strandat 2360.464 kb on + strandat 2360.468 kb on + strandat 2360.526 kb on + strandat 2360.532 kb on + strandat 2360.536 kb on + strandat 2360.537 kb on - strandat 2360.537 kb on - strandat 2360.538 kb on + strandat 2360.538 kb on + strandat 2360.539 kb on - strandat 2360.550 kb on + strandat 2360.551 kb on - strandat 2360.551 kb on - strandat 2360.586 kb on - strandat 2360.604 kb on + strandat 2360.617 kb on + strandat 2360.618 kb on - strandat 2360.632 kb on - strandat 2360.720 kb on - strandat 2360.720 kb on - strandat 2360.720 kb on - strandat 2360.742 kb on + strandat 2360.743 kb on - strandat 2360.754 kb on - strandat 2360.758 kb on - strandat 2360.758 kb on - strandat 2360.764 kb on - strandat 2360.764 kb on - strandat 2360.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,358,498 - -0.4
2,358,498 - -0.7
2,358,512 + -0.5
2,358,614 + -0.8
2,358,614 + +1.0
2,358,615 - -0.4
2,358,617 + +0.1
2,358,640 + -0.2
2,358,676 + -0.2
2,358,677 - -0.7
2,358,683 + +0.5
2,358,684 - -0.8
2,358,687 - +0.5
2,358,740 - +0.5
2,358,743 + -0.5
2,358,743 + -0.2
2,358,744 - +0.1
2,358,792 - +0.5
2,358,816 + +0.1
2,358,844 + +0.1
2,358,845 - -0.0
2,358,868 - +0.3
2,358,869 + -0.1
2,358,869 + +0.1
2,358,870 - -0.4
2,358,870 - +0.9
2,358,886 - +0.2
2,358,948 - -0.4
2,358,948 - -0.9
2,358,951 + +0.1
2,358,952 - +0.2
2,358,954 + -0.1
2,359,050 + -2.2
2,359,051 - -0.6
2,359,065 + -0.1
2,359,065 + -0.3
2,359,066 - +0.1
2,359,103 - -0.2
2,359,122 - -0.5
2,359,146 + -0.1
2,359,146 + +0.6
2,359,147 - -0.0
2,359,149 + +0.7
2,359,149 + +0.7
2,359,180 - -0.1
2,359,187 - +0.2
2,359,188 + +0.6
2,359,188 + -0.2
2,359,189 - -0.0
2,359,189 - +0.2
2,359,190 + +0.4
2,359,190 + -2.1
2,359,190 + -0.8
2,359,190 + +0.0
2,359,191 - -0.2
2,359,191 - -0.7
2,359,191 - +0.7
2,359,191 - -0.6
2,359,191 - -0.4
2,359,209 - +1.2
2,359,209 - +2.1
2,359,299 - -0.3
2,359,352 + -0.7
2,359,377 + -0.4
2,359,378 - +0.3
2,359,415 + -0.8
2,359,421 + -0.8
2,359,453 + CA264_10160 0.13 -0.0
2,359,474 + CA264_10160 0.18 -0.2
2,359,570 + CA264_10160 0.41 -0.1
2,359,789 + -1.0
2,359,812 + +0.1
2,359,828 - -0.3
2,359,828 - +0.3
2,359,832 - +0.4
2,359,925 + +0.3
2,360,002 - -0.7
2,360,002 - -0.2
2,360,032 - +0.1
2,360,141 - +0.3
2,360,141 - -0.1
2,360,184 - +0.2
2,360,197 - +0.1
2,360,218 - +0.8
2,360,249 + +0.0
2,360,250 - -0.7
2,360,280 - +2.3
2,360,289 - +0.2
2,360,346 + +1.3
2,360,347 - -0.3
2,360,370 + -0.9
2,360,373 + -0.6
2,360,374 - -0.3
2,360,374 - -0.4
2,360,378 - -2.1
2,360,400 - +1.2
2,360,432 + -0.2
2,360,432 + +0.6
2,360,464 + +0.9
2,360,464 + -0.8
2,360,468 + -0.0
2,360,526 + -0.7
2,360,532 + +1.5
2,360,536 + -1.4
2,360,537 - +0.2
2,360,537 - +0.1
2,360,538 + -0.5
2,360,538 + -0.2
2,360,539 - +1.2
2,360,550 + -0.1
2,360,551 - -1.2
2,360,551 - -0.6
2,360,586 - -0.7
2,360,604 + -0.1
2,360,617 + +2.0
2,360,618 - +0.3
2,360,632 - +1.0
2,360,720 - -0.3
2,360,720 - +0.7
2,360,720 - +0.2
2,360,742 + -0.9
2,360,743 - -0.7
2,360,754 - -0.4
2,360,758 - -0.2
2,360,758 - -0.3
2,360,764 - +0.7
2,360,764 - -0.1
2,360,764 - +0.3

Or see this region's nucleotide sequence