Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09060

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09055 and CA264_09060 overlap by 11 nucleotidesCA264_09060 and CA264_09065 are separated by 51 nucleotides CA264_09055: CA264_09055 - PAS domain-containing sensor histidine kinase, at 2,120,060 to 2,122,249 _09055 CA264_09060: CA264_09060 - response regulator, at 2,122,239 to 2,122,628 _09060 CA264_09065: CA264_09065 - PAS domain-containing sensor histidine kinase, at 2,122,680 to 2,123,801 _09065 Position (kb) 2122 2123Strain fitness (log2 ratio) -1 0 1at 2121.400 kb on + strand, within CA264_09055at 2121.401 kb on - strand, within CA264_09055at 2121.401 kb on - strand, within CA264_09055at 2121.401 kb on - strand, within CA264_09055at 2121.434 kb on + strand, within CA264_09055at 2121.434 kb on + strand, within CA264_09055at 2121.435 kb on - strand, within CA264_09055at 2121.435 kb on - strand, within CA264_09055at 2121.435 kb on - strand, within CA264_09055at 2121.438 kb on + strand, within CA264_09055at 2121.439 kb on - strand, within CA264_09055at 2121.506 kb on - strand, within CA264_09055at 2121.506 kb on - strand, within CA264_09055at 2121.557 kb on + strand, within CA264_09055at 2121.558 kb on - strand, within CA264_09055at 2121.590 kb on + strand, within CA264_09055at 2121.593 kb on - strand, within CA264_09055at 2121.736 kb on - strand, within CA264_09055at 2121.745 kb on - strand, within CA264_09055at 2121.870 kb on + strand, within CA264_09055at 2121.893 kb on + strand, within CA264_09055at 2121.917 kb on + strand, within CA264_09055at 2121.957 kb on + strand, within CA264_09055at 2121.958 kb on - strand, within CA264_09055at 2121.962 kb on + strand, within CA264_09055at 2122.023 kb on - strand, within CA264_09055at 2122.094 kb on + strandat 2122.095 kb on - strandat 2122.216 kb on + strandat 2122.221 kb on + strandat 2122.224 kb on - strandat 2122.227 kb on + strandat 2122.228 kb on - strandat 2122.242 kb on + strandat 2122.255 kb on - strandat 2122.278 kb on - strand, within CA264_09060at 2122.442 kb on + strand, within CA264_09060at 2122.512 kb on + strand, within CA264_09060at 2122.520 kb on + strand, within CA264_09060at 2122.616 kb on - strandat 2122.626 kb on + strandat 2122.626 kb on + strandat 2122.627 kb on - strandat 2122.695 kb on + strandat 2122.696 kb on - strandat 2122.758 kb on + strandat 2122.774 kb on - strandat 2122.774 kb on - strandat 2122.776 kb on - strandat 2122.807 kb on + strand, within CA264_09065at 2122.890 kb on + strand, within CA264_09065at 2122.906 kb on + strand, within CA264_09065at 2122.906 kb on + strand, within CA264_09065at 2122.906 kb on + strand, within CA264_09065at 2122.906 kb on + strand, within CA264_09065at 2122.906 kb on + strand, within CA264_09065at 2122.907 kb on - strand, within CA264_09065at 2122.948 kb on - strand, within CA264_09065at 2123.196 kb on - strand, within CA264_09065at 2123.375 kb on - strand, within CA264_09065at 2123.375 kb on - strand, within CA264_09065at 2123.470 kb on - strand, within CA264_09065at 2123.470 kb on - strand, within CA264_09065at 2123.514 kb on + strand, within CA264_09065at 2123.579 kb on + strand, within CA264_09065at 2123.579 kb on + strand, within CA264_09065at 2123.581 kb on + strand, within CA264_09065

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,121,400 + CA264_09055 0.61 +0.4
2,121,401 - CA264_09055 0.61 +0.0
2,121,401 - CA264_09055 0.61 +0.8
2,121,401 - CA264_09055 0.61 -0.2
2,121,434 + CA264_09055 0.63 -0.1
2,121,434 + CA264_09055 0.63 +0.2
2,121,435 - CA264_09055 0.63 -0.0
2,121,435 - CA264_09055 0.63 +0.1
2,121,435 - CA264_09055 0.63 -0.4
2,121,438 + CA264_09055 0.63 -1.1
2,121,439 - CA264_09055 0.63 +1.1
2,121,506 - CA264_09055 0.66 -0.1
2,121,506 - CA264_09055 0.66 +1.1
2,121,557 + CA264_09055 0.68 -1.3
2,121,558 - CA264_09055 0.68 -0.8
2,121,590 + CA264_09055 0.70 -0.2
2,121,593 - CA264_09055 0.70 +0.3
2,121,736 - CA264_09055 0.77 +0.1
2,121,745 - CA264_09055 0.77 +0.9
2,121,870 + CA264_09055 0.83 +0.0
2,121,893 + CA264_09055 0.84 +1.3
2,121,917 + CA264_09055 0.85 +0.4
2,121,957 + CA264_09055 0.87 -0.4
2,121,958 - CA264_09055 0.87 -0.4
2,121,962 + CA264_09055 0.87 +1.2
2,122,023 - CA264_09055 0.90 -0.5
2,122,094 + -0.4
2,122,095 - -0.0
2,122,216 + -0.3
2,122,221 + -1.2
2,122,224 - -0.0
2,122,227 + -0.0
2,122,228 - +0.2
2,122,242 + +0.6
2,122,255 - -0.3
2,122,278 - CA264_09060 0.10 -0.8
2,122,442 + CA264_09060 0.52 -0.4
2,122,512 + CA264_09060 0.70 +0.3
2,122,520 + CA264_09060 0.72 -0.5
2,122,616 - -0.3
2,122,626 + -0.1
2,122,626 + -0.4
2,122,627 - +0.3
2,122,695 + -0.3
2,122,696 - -1.1
2,122,758 + -0.2
2,122,774 - +0.3
2,122,774 - -0.2
2,122,776 - -0.6
2,122,807 + CA264_09065 0.11 -1.1
2,122,890 + CA264_09065 0.19 -0.2
2,122,906 + CA264_09065 0.20 +0.2
2,122,906 + CA264_09065 0.20 -0.8
2,122,906 + CA264_09065 0.20 -0.3
2,122,906 + CA264_09065 0.20 -0.7
2,122,906 + CA264_09065 0.20 -0.2
2,122,907 - CA264_09065 0.20 -0.3
2,122,948 - CA264_09065 0.24 +0.2
2,123,196 - CA264_09065 0.46 -0.1
2,123,375 - CA264_09065 0.62 -1.2
2,123,375 - CA264_09065 0.62 +0.5
2,123,470 - CA264_09065 0.70 -0.0
2,123,470 - CA264_09065 0.70 +0.4
2,123,514 + CA264_09065 0.74 -0.3
2,123,579 + CA264_09065 0.80 -0.8
2,123,579 + CA264_09065 0.80 -0.2
2,123,581 + CA264_09065 0.80 +0.4

Or see this region's nucleotide sequence