Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21385 and ABIE41_RS21390 are separated by 55 nucleotides ABIE41_RS21390 and ABIE41_RS21395 overlap by 4 nucleotides ABIE41_RS21395 and ABIE41_RS21400 are separated by 10 nucleotides
ABIE41_RS21385: ABIE41_RS21385 - urease subunit alpha, at 4,392,562 to 4,394,298
_RS21385
ABIE41_RS21390: ABIE41_RS21390 - urease subunit gamma, at 4,394,354 to 4,394,974
_RS21390
ABIE41_RS21395: ABIE41_RS21395 - hypothetical protein, at 4,394,971 to 4,395,285
_RS21395
ABIE41_RS21400: ABIE41_RS21400 - urease accessory protein UreD, at 4,395,296 to 4,396,150
_RS21400
Position (kb) 4394
4395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4393.862 kb on + strand, within ABIE41_RS21385 at 4393.862 kb on + strand, within ABIE41_RS21385 at 4393.862 kb on + strand, within ABIE41_RS21385 at 4393.862 kb on + strand, within ABIE41_RS21385 at 4393.862 kb on + strand, within ABIE41_RS21385 at 4393.863 kb on - strand, within ABIE41_RS21385 at 4393.863 kb on - strand, within ABIE41_RS21385 at 4393.863 kb on - strand, within ABIE41_RS21385 at 4393.863 kb on - strand, within ABIE41_RS21385 at 4393.863 kb on - strand, within ABIE41_RS21385 at 4393.863 kb on - strand, within ABIE41_RS21385 at 4393.863 kb on - strand, within ABIE41_RS21385 at 4393.869 kb on + strand, within ABIE41_RS21385 at 4393.869 kb on + strand, within ABIE41_RS21385 at 4393.870 kb on - strand, within ABIE41_RS21385 at 4394.181 kb on - strand at 4394.270 kb on + strand at 4394.286 kb on - strand at 4394.389 kb on - strand at 4394.542 kb on - strand, within ABIE41_RS21390 at 4394.880 kb on + strand, within ABIE41_RS21390 at 4395.074 kb on + strand, within ABIE41_RS21395 at 4395.074 kb on + strand, within ABIE41_RS21395 at 4395.074 kb on + strand, within ABIE41_RS21395 at 4395.254 kb on + strand at 4395.254 kb on + strand at 4395.254 kb on + strand at 4395.254 kb on + strand at 4395.254 kb on + strand at 4395.255 kb on - strand at 4395.255 kb on - strand at 4395.255 kb on - strand at 4395.255 kb on - strand at 4395.255 kb on - strand at 4395.255 kb on - strand at 4395.255 kb on - strand at 4395.255 kb on - strand at 4395.365 kb on + strand at 4395.365 kb on + strand at 4395.365 kb on + strand at 4395.859 kb on - strand, within ABIE41_RS21400 at 4395.859 kb on - strand, within ABIE41_RS21400
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 4,393,862 + ABIE41_RS21385 0.75 +0.3 4,393,862 + ABIE41_RS21385 0.75 +0.7 4,393,862 + ABIE41_RS21385 0.75 +0.0 4,393,862 + ABIE41_RS21385 0.75 -0.3 4,393,862 + ABIE41_RS21385 0.75 -1.1 4,393,863 - ABIE41_RS21385 0.75 -1.6 4,393,863 - ABIE41_RS21385 0.75 -1.5 4,393,863 - ABIE41_RS21385 0.75 +0.5 4,393,863 - ABIE41_RS21385 0.75 +0.4 4,393,863 - ABIE41_RS21385 0.75 -0.1 4,393,863 - ABIE41_RS21385 0.75 -2.0 4,393,863 - ABIE41_RS21385 0.75 -0.6 4,393,869 + ABIE41_RS21385 0.75 +2.2 4,393,869 + ABIE41_RS21385 0.75 -1.1 4,393,870 - ABIE41_RS21385 0.75 -1.8 4,394,181 - -0.1 4,394,270 + -1.6 4,394,286 - -1.1 4,394,389 - -0.2 4,394,542 - ABIE41_RS21390 0.30 -1.0 4,394,880 + ABIE41_RS21390 0.85 -0.1 4,395,074 + ABIE41_RS21395 0.33 +0.3 4,395,074 + ABIE41_RS21395 0.33 +0.2 4,395,074 + ABIE41_RS21395 0.33 -1.9 4,395,254 + +0.3 4,395,254 + +2.3 4,395,254 + -0.7 4,395,254 + +1.0 4,395,254 + +0.0 4,395,255 - +0.3 4,395,255 - -1.6 4,395,255 - +0.1 4,395,255 - +0.1 4,395,255 - +1.3 4,395,255 - +0.8 4,395,255 - -0.2 4,395,255 - +0.2 4,395,365 + -0.4 4,395,365 + -0.1 4,395,365 + -0.1 4,395,859 - ABIE41_RS21400 0.66 +0.0 4,395,859 - ABIE41_RS21400 0.66 -0.7
Or see this region's nucleotide sequence