Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12570

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS12560 and ABIE41_RS12565 overlap by 4 nucleotidesABIE41_RS12565 and ABIE41_RS12570 overlap by 4 nucleotidesABIE41_RS12570 and ABIE41_RS12575 are separated by 38 nucleotides ABIE41_RS12560: ABIE41_RS12560 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,571,726 to 2,572,784 _RS12560 ABIE41_RS12565: ABIE41_RS12565 - hypothetical protein, at 2,572,781 to 2,573,167 _RS12565 ABIE41_RS12570: ABIE41_RS12570 - penicillin-binding protein 2, at 2,573,164 to 2,574,924 _RS12570 ABIE41_RS12575: ABIE41_RS12575 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,574,963 to 2,576,417 _RS12575 Position (kb) 2573 2574 2575Strain fitness (log2 ratio) -1 0 1at 2572.227 kb on + strand, within ABIE41_RS12560at 2572.233 kb on + strand, within ABIE41_RS12560

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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2,572,227 + ABIE41_RS12560 0.47 -0.8
2,572,233 + ABIE41_RS12560 0.48 -0.8

Or see this region's nucleotide sequence