Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11670

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11660 and ABIE41_RS11665 are separated by 107 nucleotidesABIE41_RS11665 and ABIE41_RS11670 are separated by 198 nucleotidesABIE41_RS11670 and ABIE41_RS11675 are separated by 206 nucleotides ABIE41_RS11660: ABIE41_RS11660 - 3-isopropylmalate dehydratase large subunit, at 2,391,329 to 2,392,747 _RS11660 ABIE41_RS11665: ABIE41_RS11665 - hypothetical protein, at 2,392,855 to 2,393,031 _RS11665 ABIE41_RS11670: ABIE41_RS11670 - 50S ribosomal protein L19, at 2,393,230 to 2,393,625 _RS11670 ABIE41_RS11675: ABIE41_RS11675 - SDR family oxidoreductase, at 2,393,832 to 2,394,620 _RS11675 Position (kb) 2393 2394Strain fitness (log2 ratio) -1 0 1 2at 2393.231 kb on + strandat 2393.231 kb on + strandat 2393.232 kb on - strandat 2393.232 kb on - strandat 2393.232 kb on - strandat 2393.319 kb on - strand, within ABIE41_RS11670at 2393.322 kb on - strand, within ABIE41_RS11670at 2394.528 kb on + strand, within ABIE41_RS11675at 2394.528 kb on + strand, within ABIE41_RS11675at 2394.528 kb on + strand, within ABIE41_RS11675at 2394.528 kb on + strand, within ABIE41_RS11675at 2394.528 kb on + strand, within ABIE41_RS11675at 2394.529 kb on - strand, within ABIE41_RS11675at 2394.529 kb on - strand, within ABIE41_RS11675at 2394.529 kb on - strand, within ABIE41_RS11675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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2,393,231 + +0.0
2,393,231 + -1.2
2,393,232 - +0.8
2,393,232 - -0.1
2,393,232 - +0.3
2,393,319 - ABIE41_RS11670 0.22 -0.4
2,393,322 - ABIE41_RS11670 0.23 -0.8
2,394,528 + ABIE41_RS11675 0.88 +0.4
2,394,528 + ABIE41_RS11675 0.88 +1.8
2,394,528 + ABIE41_RS11675 0.88 -1.1
2,394,528 + ABIE41_RS11675 0.88 -0.1
2,394,528 + ABIE41_RS11675 0.88 -0.2
2,394,529 - ABIE41_RS11675 0.88 +0.8
2,394,529 - ABIE41_RS11675 0.88 -0.6
2,394,529 - ABIE41_RS11675 0.88 +0.2

Or see this region's nucleotide sequence