Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07700 and ABIE41_RS07705 are separated by 21 nucleotides ABIE41_RS07705 and ABIE41_RS07710 overlap by 4 nucleotides ABIE41_RS07710 and ABIE41_RS07715 are separated by 110 nucleotides
ABIE41_RS07700: ABIE41_RS07700 - alpha/beta fold hydrolase, at 1,573,387 to 1,574,466
_RS07700
ABIE41_RS07705: ABIE41_RS07705 - phosphonate ABC transporter, permease protein PhnE, at 1,574,488 to 1,575,342
_RS07705
ABIE41_RS07710: ABIE41_RS07710 - phosphonate ABC transporter, permease protein PhnE, at 1,575,339 to 1,576,220
_RS07710
ABIE41_RS07715: ABIE41_RS07715 - phosphonate ABC transporter substrate-binding protein, at 1,576,331 to 1,577,248
_RS07715
Position (kb)
1574
1575
1576 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1573.687 kb on + strand, within ABIE41_RS07700 at 1573.687 kb on + strand, within ABIE41_RS07700 at 1573.687 kb on + strand, within ABIE41_RS07700 at 1573.688 kb on - strand, within ABIE41_RS07700 at 1573.688 kb on - strand, within ABIE41_RS07700 at 1573.688 kb on - strand, within ABIE41_RS07700 at 1573.688 kb on - strand, within ABIE41_RS07700 at 1573.769 kb on - strand, within ABIE41_RS07700 at 1573.774 kb on + strand, within ABIE41_RS07700 at 1573.775 kb on - strand, within ABIE41_RS07700 at 1573.775 kb on - strand, within ABIE41_RS07700 at 1573.775 kb on - strand, within ABIE41_RS07700 at 1574.023 kb on + strand, within ABIE41_RS07700 at 1574.023 kb on + strand, within ABIE41_RS07700 at 1574.023 kb on + strand, within ABIE41_RS07700 at 1574.023 kb on + strand, within ABIE41_RS07700 at 1574.023 kb on + strand, within ABIE41_RS07700 at 1574.024 kb on - strand, within ABIE41_RS07700 at 1574.024 kb on - strand, within ABIE41_RS07700 at 1574.024 kb on - strand, within ABIE41_RS07700 at 1574.024 kb on - strand, within ABIE41_RS07700 at 1574.024 kb on - strand, within ABIE41_RS07700 at 1574.191 kb on + strand, within ABIE41_RS07700 at 1574.215 kb on + strand, within ABIE41_RS07700 at 1574.216 kb on - strand, within ABIE41_RS07700 at 1574.216 kb on - strand, within ABIE41_RS07700 at 1574.229 kb on + strand, within ABIE41_RS07700 at 1574.625 kb on - strand, within ABIE41_RS07705 at 1574.625 kb on - strand, within ABIE41_RS07705 at 1574.625 kb on - strand, within ABIE41_RS07705 at 1574.625 kb on - strand, within ABIE41_RS07705 at 1574.690 kb on + strand, within ABIE41_RS07705 at 1574.690 kb on + strand, within ABIE41_RS07705 at 1574.690 kb on + strand, within ABIE41_RS07705 at 1574.690 kb on + strand, within ABIE41_RS07705 at 1574.690 kb on + strand, within ABIE41_RS07705 at 1574.691 kb on - strand, within ABIE41_RS07705 at 1574.691 kb on - strand, within ABIE41_RS07705 at 1574.691 kb on - strand, within ABIE41_RS07705 at 1574.691 kb on - strand, within ABIE41_RS07705 at 1574.691 kb on - strand, within ABIE41_RS07705 at 1574.691 kb on - strand, within ABIE41_RS07705 at 1574.691 kb on - strand, within ABIE41_RS07705 at 1574.693 kb on + strand, within ABIE41_RS07705 at 1574.693 kb on + strand, within ABIE41_RS07705 at 1574.694 kb on - strand, within ABIE41_RS07705 at 1574.694 kb on - strand, within ABIE41_RS07705 at 1574.694 kb on - strand, within ABIE41_RS07705 at 1574.825 kb on + strand, within ABIE41_RS07705 at 1574.825 kb on + strand, within ABIE41_RS07705 at 1574.825 kb on + strand, within ABIE41_RS07705 at 1574.826 kb on - strand, within ABIE41_RS07705 at 1574.848 kb on - strand, within ABIE41_RS07705 at 1575.010 kb on - strand, within ABIE41_RS07705 at 1575.010 kb on - strand, within ABIE41_RS07705 at 1575.160 kb on - strand, within ABIE41_RS07705 at 1575.160 kb on - strand, within ABIE41_RS07705 at 1575.212 kb on + strand, within ABIE41_RS07705 at 1575.212 kb on + strand, within ABIE41_RS07705 at 1575.451 kb on + strand, within ABIE41_RS07710 at 1575.557 kb on - strand, within ABIE41_RS07710 at 1575.557 kb on - strand, within ABIE41_RS07710 at 1575.557 kb on - strand, within ABIE41_RS07710 at 1575.873 kb on + strand, within ABIE41_RS07710 at 1575.873 kb on + strand, within ABIE41_RS07710 at 1575.873 kb on + strand, within ABIE41_RS07710 at 1575.873 kb on + strand, within ABIE41_RS07710 at 1575.910 kb on + strand, within ABIE41_RS07710 at 1575.910 kb on + strand, within ABIE41_RS07710 at 1575.910 kb on + strand, within ABIE41_RS07710 at 1575.911 kb on - strand, within ABIE41_RS07710 at 1576.027 kb on + strand, within ABIE41_RS07710 at 1576.027 kb on + strand, within ABIE41_RS07710 at 1576.027 kb on + strand, within ABIE41_RS07710 at 1576.027 kb on + strand, within ABIE41_RS07710 at 1576.027 kb on + strand, within ABIE41_RS07710 at 1576.027 kb on + strand, within ABIE41_RS07710 at 1576.028 kb on - strand, within ABIE41_RS07710 at 1576.165 kb on + strand at 1576.165 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 1,573,687 + ABIE41_RS07700 0.28 -1.3 1,573,687 + ABIE41_RS07700 0.28 +0.3 1,573,687 + ABIE41_RS07700 0.28 +0.3 1,573,688 - ABIE41_RS07700 0.28 -0.5 1,573,688 - ABIE41_RS07700 0.28 -0.3 1,573,688 - ABIE41_RS07700 0.28 -0.9 1,573,688 - ABIE41_RS07700 0.28 -0.4 1,573,769 - ABIE41_RS07700 0.35 +0.1 1,573,774 + ABIE41_RS07700 0.36 -1.1 1,573,775 - ABIE41_RS07700 0.36 +0.2 1,573,775 - ABIE41_RS07700 0.36 +0.2 1,573,775 - ABIE41_RS07700 0.36 -0.3 1,574,023 + ABIE41_RS07700 0.59 -0.2 1,574,023 + ABIE41_RS07700 0.59 +0.3 1,574,023 + ABIE41_RS07700 0.59 -1.8 1,574,023 + ABIE41_RS07700 0.59 -2.0 1,574,023 + ABIE41_RS07700 0.59 -0.0 1,574,024 - ABIE41_RS07700 0.59 +0.2 1,574,024 - ABIE41_RS07700 0.59 -0.6 1,574,024 - ABIE41_RS07700 0.59 +0.1 1,574,024 - ABIE41_RS07700 0.59 -0.6 1,574,024 - ABIE41_RS07700 0.59 -0.6 1,574,191 + ABIE41_RS07700 0.74 +0.2 1,574,215 + ABIE41_RS07700 0.77 +0.2 1,574,216 - ABIE41_RS07700 0.77 +0.3 1,574,216 - ABIE41_RS07700 0.77 +0.3 1,574,229 + ABIE41_RS07700 0.78 +0.3 1,574,625 - ABIE41_RS07705 0.16 -0.1 1,574,625 - ABIE41_RS07705 0.16 +0.6 1,574,625 - ABIE41_RS07705 0.16 -0.4 1,574,625 - ABIE41_RS07705 0.16 +0.6 1,574,690 + ABIE41_RS07705 0.24 +0.3 1,574,690 + ABIE41_RS07705 0.24 +0.3 1,574,690 + ABIE41_RS07705 0.24 -0.6 1,574,690 + ABIE41_RS07705 0.24 -0.5 1,574,690 + ABIE41_RS07705 0.24 -0.6 1,574,691 - ABIE41_RS07705 0.24 +0.7 1,574,691 - ABIE41_RS07705 0.24 +0.6 1,574,691 - ABIE41_RS07705 0.24 +0.1 1,574,691 - ABIE41_RS07705 0.24 +1.3 1,574,691 - ABIE41_RS07705 0.24 -0.5 1,574,691 - ABIE41_RS07705 0.24 +0.4 1,574,691 - ABIE41_RS07705 0.24 +0.4 1,574,693 + ABIE41_RS07705 0.24 +0.9 1,574,693 + ABIE41_RS07705 0.24 +0.1 1,574,694 - ABIE41_RS07705 0.24 -1.3 1,574,694 - ABIE41_RS07705 0.24 -0.1 1,574,694 - ABIE41_RS07705 0.24 -0.5 1,574,825 + ABIE41_RS07705 0.39 -0.1 1,574,825 + ABIE41_RS07705 0.39 -0.7 1,574,825 + ABIE41_RS07705 0.39 +0.4 1,574,826 - ABIE41_RS07705 0.40 -0.1 1,574,848 - ABIE41_RS07705 0.42 -1.9 1,575,010 - ABIE41_RS07705 0.61 +1.1 1,575,010 - ABIE41_RS07705 0.61 +1.0 1,575,160 - ABIE41_RS07705 0.79 -0.3 1,575,160 - ABIE41_RS07705 0.79 -0.3 1,575,212 + ABIE41_RS07705 0.85 +0.6 1,575,212 + ABIE41_RS07705 0.85 +1.3 1,575,451 + ABIE41_RS07710 0.13 -0.9 1,575,557 - ABIE41_RS07710 0.25 -0.0 1,575,557 - ABIE41_RS07710 0.25 +0.2 1,575,557 - ABIE41_RS07710 0.25 -0.6 1,575,873 + ABIE41_RS07710 0.61 +0.5 1,575,873 + ABIE41_RS07710 0.61 +2.4 1,575,873 + ABIE41_RS07710 0.61 +0.2 1,575,873 + ABIE41_RS07710 0.61 +0.3 1,575,910 + ABIE41_RS07710 0.65 -0.1 1,575,910 + ABIE41_RS07710 0.65 -0.0 1,575,910 + ABIE41_RS07710 0.65 +0.7 1,575,911 - ABIE41_RS07710 0.65 +0.5 1,576,027 + ABIE41_RS07710 0.78 -0.7 1,576,027 + ABIE41_RS07710 0.78 -0.2 1,576,027 + ABIE41_RS07710 0.78 -0.4 1,576,027 + ABIE41_RS07710 0.78 +0.9 1,576,027 + ABIE41_RS07710 0.78 +1.0 1,576,027 + ABIE41_RS07710 0.78 +0.3 1,576,028 - ABIE41_RS07710 0.78 -0.9 1,576,165 + +0.4 1,576,165 + -2.2
Or see this region's nucleotide sequence