Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS07985

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS07975 and ABIE40_RS07980 are separated by 122 nucleotidesABIE40_RS07980 and ABIE40_RS07985 are separated by 76 nucleotidesABIE40_RS07985 and ABIE40_RS07990 are separated by 139 nucleotidesABIE40_RS07990 and ABIE40_RS07995 overlap by 4 nucleotides ABIE40_RS07975: ABIE40_RS07975 - DNA-directed RNA polymerase subunit alpha, at 1,541,378 to 1,542,388 _RS07975 ABIE40_RS07980: ABIE40_RS07980 - 50S ribosomal protein L17, at 1,542,511 to 1,542,936 _RS07980 ABIE40_RS07985: ABIE40_RS07985 - DUF817 domain-containing protein, at 1,543,013 to 1,543,858 _RS07985 ABIE40_RS07990: ABIE40_RS07990 - DUF2809 domain-containing protein, at 1,543,998 to 1,544,405 _RS07990 ABIE40_RS07995: ABIE40_RS07995 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 1,544,402 to 1,545,061 _RS07995 Position (kb) 1543 1544Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1543.146 kb on + strand, within ABIE40_RS07985at 1543.248 kb on + strand, within ABIE40_RS07985at 1543.248 kb on + strand, within ABIE40_RS07985at 1543.249 kb on - strand, within ABIE40_RS07985at 1543.278 kb on + strand, within ABIE40_RS07985at 1543.279 kb on - strand, within ABIE40_RS07985at 1543.303 kb on + strand, within ABIE40_RS07985at 1543.303 kb on + strand, within ABIE40_RS07985at 1543.304 kb on - strand, within ABIE40_RS07985at 1543.304 kb on - strand, within ABIE40_RS07985at 1543.304 kb on - strand, within ABIE40_RS07985at 1543.305 kb on + strand, within ABIE40_RS07985at 1543.305 kb on + strand, within ABIE40_RS07985at 1543.306 kb on - strand, within ABIE40_RS07985at 1543.306 kb on - strand, within ABIE40_RS07985at 1543.324 kb on + strand, within ABIE40_RS07985at 1543.324 kb on + strand, within ABIE40_RS07985at 1543.324 kb on + strand, within ABIE40_RS07985at 1543.325 kb on - strand, within ABIE40_RS07985at 1543.326 kb on + strand, within ABIE40_RS07985at 1543.326 kb on + strand, within ABIE40_RS07985at 1543.326 kb on + strand, within ABIE40_RS07985at 1543.327 kb on - strand, within ABIE40_RS07985at 1543.327 kb on - strand, within ABIE40_RS07985at 1543.327 kb on - strand, within ABIE40_RS07985at 1543.327 kb on - strand, within ABIE40_RS07985at 1543.327 kb on - strand, within ABIE40_RS07985at 1543.384 kb on - strand, within ABIE40_RS07985at 1543.437 kb on + strand, within ABIE40_RS07985at 1543.437 kb on + strand, within ABIE40_RS07985at 1543.438 kb on - strand, within ABIE40_RS07985at 1543.438 kb on - strand, within ABIE40_RS07985at 1543.438 kb on - strand, within ABIE40_RS07985at 1543.438 kb on - strand, within ABIE40_RS07985at 1543.438 kb on - strand, within ABIE40_RS07985at 1543.438 kb on - strand, within ABIE40_RS07985at 1543.438 kb on - strand, within ABIE40_RS07985at 1543.455 kb on + strand, within ABIE40_RS07985at 1543.455 kb on + strand, within ABIE40_RS07985at 1543.455 kb on + strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.456 kb on - strand, within ABIE40_RS07985at 1543.495 kb on + strand, within ABIE40_RS07985at 1543.495 kb on + strand, within ABIE40_RS07985at 1543.495 kb on + strand, within ABIE40_RS07985at 1543.495 kb on + strand, within ABIE40_RS07985at 1543.496 kb on - strand, within ABIE40_RS07985at 1543.496 kb on - strand, within ABIE40_RS07985at 1543.498 kb on - strand, within ABIE40_RS07985at 1543.512 kb on + strand, within ABIE40_RS07985at 1543.645 kb on + strand, within ABIE40_RS07985at 1543.668 kb on + strand, within ABIE40_RS07985at 1543.668 kb on + strand, within ABIE40_RS07985at 1543.685 kb on + strand, within ABIE40_RS07985at 1543.685 kb on + strand, within ABIE40_RS07985at 1543.767 kb on + strand, within ABIE40_RS07985at 1543.820 kb on + strandat 1543.958 kb on + strandat 1543.958 kb on + strandat 1543.958 kb on + strandat 1543.959 kb on - strandat 1543.959 kb on - strandat 1543.959 kb on - strandat 1543.959 kb on - strandat 1543.959 kb on - strandat 1543.959 kb on - strandat 1543.959 kb on - strandat 1543.959 kb on - strandat 1543.976 kb on + strandat 1544.032 kb on - strandat 1544.072 kb on - strand, within ABIE40_RS07990at 1544.108 kb on + strand, within ABIE40_RS07990at 1544.108 kb on + strand, within ABIE40_RS07990at 1544.109 kb on - strand, within ABIE40_RS07990at 1544.254 kb on - strand, within ABIE40_RS07990at 1544.343 kb on + strand, within ABIE40_RS07990at 1544.343 kb on + strand, within ABIE40_RS07990at 1544.343 kb on + strand, within ABIE40_RS07990at 1544.403 kb on + strandat 1544.404 kb on - strandat 1544.488 kb on - strand, within ABIE40_RS07995at 1544.498 kb on + strand, within ABIE40_RS07995at 1544.498 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.517 kb on + strand, within ABIE40_RS07995at 1544.518 kb on - strand, within ABIE40_RS07995at 1544.518 kb on - strand, within ABIE40_RS07995at 1544.518 kb on - strand, within ABIE40_RS07995at 1544.518 kb on - strand, within ABIE40_RS07995at 1544.518 kb on - strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.521 kb on + strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.522 kb on - strand, within ABIE40_RS07995at 1544.523 kb on + strand, within ABIE40_RS07995at 1544.523 kb on + strand, within ABIE40_RS07995at 1544.523 kb on + strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.524 kb on - strand, within ABIE40_RS07995at 1544.589 kb on + strand, within ABIE40_RS07995at 1544.589 kb on + strand, within ABIE40_RS07995at 1544.590 kb on - strand, within ABIE40_RS07995at 1544.766 kb on + strand, within ABIE40_RS07995at 1544.766 kb on + strand, within ABIE40_RS07995at 1544.766 kb on + strand, within ABIE40_RS07995at 1544.767 kb on - strand, within ABIE40_RS07995at 1544.767 kb on - strand, within ABIE40_RS07995at 1544.767 kb on - strand, within ABIE40_RS07995at 1544.767 kb on - strand, within ABIE40_RS07995at 1544.767 kb on - strand, within ABIE40_RS07995at 1544.767 kb on - strand, within ABIE40_RS07995at 1544.791 kb on - strand, within ABIE40_RS07995at 1544.793 kb on + strand, within ABIE40_RS07995at 1544.793 kb on + strand, within ABIE40_RS07995at 1544.794 kb on - strand, within ABIE40_RS07995at 1544.832 kb on + strand, within ABIE40_RS07995at 1544.833 kb on - strand, within ABIE40_RS07995at 1544.833 kb on - strand, within ABIE40_RS07995

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,543,146 + ABIE40_RS07985 0.16 -0.5
1,543,248 + ABIE40_RS07985 0.28 +0.1
1,543,248 + ABIE40_RS07985 0.28 +0.2
1,543,249 - ABIE40_RS07985 0.28 +1.7
1,543,278 + ABIE40_RS07985 0.31 -0.2
1,543,279 - ABIE40_RS07985 0.31 +0.2
1,543,303 + ABIE40_RS07985 0.34 -0.5
1,543,303 + ABIE40_RS07985 0.34 +1.6
1,543,304 - ABIE40_RS07985 0.34 -1.0
1,543,304 - ABIE40_RS07985 0.34 +0.0
1,543,304 - ABIE40_RS07985 0.34 +0.4
1,543,305 + ABIE40_RS07985 0.35 -0.2
1,543,305 + ABIE40_RS07985 0.35 -0.8
1,543,306 - ABIE40_RS07985 0.35 +0.5
1,543,306 - ABIE40_RS07985 0.35 -2.7
1,543,324 + ABIE40_RS07985 0.37 -2.3
1,543,324 + ABIE40_RS07985 0.37 -0.3
1,543,324 + ABIE40_RS07985 0.37 -0.5
1,543,325 - ABIE40_RS07985 0.37 +0.3
1,543,326 + ABIE40_RS07985 0.37 -0.0
1,543,326 + ABIE40_RS07985 0.37 +1.4
1,543,326 + ABIE40_RS07985 0.37 -0.4
1,543,327 - ABIE40_RS07985 0.37 +1.2
1,543,327 - ABIE40_RS07985 0.37 -1.1
1,543,327 - ABIE40_RS07985 0.37 -0.4
1,543,327 - ABIE40_RS07985 0.37 +0.9
1,543,327 - ABIE40_RS07985 0.37 -0.1
1,543,384 - ABIE40_RS07985 0.44 +0.2
1,543,437 + ABIE40_RS07985 0.50 -0.7
1,543,437 + ABIE40_RS07985 0.50 -0.4
1,543,438 - ABIE40_RS07985 0.50 -0.6
1,543,438 - ABIE40_RS07985 0.50 -0.8
1,543,438 - ABIE40_RS07985 0.50 -0.5
1,543,438 - ABIE40_RS07985 0.50 +0.0
1,543,438 - ABIE40_RS07985 0.50 +1.6
1,543,438 - ABIE40_RS07985 0.50 +1.0
1,543,438 - ABIE40_RS07985 0.50 -1.0
1,543,455 + ABIE40_RS07985 0.52 -0.6
1,543,455 + ABIE40_RS07985 0.52 -0.2
1,543,455 + ABIE40_RS07985 0.52 +1.6
1,543,456 - ABIE40_RS07985 0.52 -1.5
1,543,456 - ABIE40_RS07985 0.52 -2.3
1,543,456 - ABIE40_RS07985 0.52 +1.1
1,543,456 - ABIE40_RS07985 0.52 -0.3
1,543,456 - ABIE40_RS07985 0.52 +0.7
1,543,456 - ABIE40_RS07985 0.52 +0.5
1,543,456 - ABIE40_RS07985 0.52 +0.1
1,543,456 - ABIE40_RS07985 0.52 +0.5
1,543,456 - ABIE40_RS07985 0.52 -0.4
1,543,456 - ABIE40_RS07985 0.52 +0.4
1,543,495 + ABIE40_RS07985 0.57 -0.2
1,543,495 + ABIE40_RS07985 0.57 -1.0
1,543,495 + ABIE40_RS07985 0.57 +0.7
1,543,495 + ABIE40_RS07985 0.57 -0.4
1,543,496 - ABIE40_RS07985 0.57 -0.5
1,543,496 - ABIE40_RS07985 0.57 -0.4
1,543,498 - ABIE40_RS07985 0.57 +3.8
1,543,512 + ABIE40_RS07985 0.59 +1.0
1,543,645 + ABIE40_RS07985 0.75 +2.5
1,543,668 + ABIE40_RS07985 0.77 -0.5
1,543,668 + ABIE40_RS07985 0.77 +0.2
1,543,685 + ABIE40_RS07985 0.79 -1.6
1,543,685 + ABIE40_RS07985 0.79 +0.9
1,543,767 + ABIE40_RS07985 0.89 -0.9
1,543,820 + +0.7
1,543,958 + -1.9
1,543,958 + -0.3
1,543,958 + -0.1
1,543,959 - +0.2
1,543,959 - +1.5
1,543,959 - -0.6
1,543,959 - -1.4
1,543,959 - -0.8
1,543,959 - +0.9
1,543,959 - +0.9
1,543,959 - +0.6
1,543,976 + -0.7
1,544,032 - +0.3
1,544,072 - ABIE40_RS07990 0.18 +1.0
1,544,108 + ABIE40_RS07990 0.27 +0.6
1,544,108 + ABIE40_RS07990 0.27 +1.0
1,544,109 - ABIE40_RS07990 0.27 -0.1
1,544,254 - ABIE40_RS07990 0.63 +1.5
1,544,343 + ABIE40_RS07990 0.85 +0.8
1,544,343 + ABIE40_RS07990 0.85 -1.1
1,544,343 + ABIE40_RS07990 0.85 +2.7
1,544,403 + -1.4
1,544,404 - -0.2
1,544,488 - ABIE40_RS07995 0.13 +0.1
1,544,498 + ABIE40_RS07995 0.15 +0.2
1,544,498 + ABIE40_RS07995 0.15 +0.3
1,544,517 + ABIE40_RS07995 0.17 +0.9
1,544,517 + ABIE40_RS07995 0.17 +1.7
1,544,517 + ABIE40_RS07995 0.17 +0.3
1,544,517 + ABIE40_RS07995 0.17 +1.6
1,544,517 + ABIE40_RS07995 0.17 -1.2
1,544,517 + ABIE40_RS07995 0.17 -0.1
1,544,517 + ABIE40_RS07995 0.17 +0.1
1,544,517 + ABIE40_RS07995 0.17 -2.3
1,544,518 - ABIE40_RS07995 0.18 +0.2
1,544,518 - ABIE40_RS07995 0.18 -0.5
1,544,518 - ABIE40_RS07995 0.18 -2.0
1,544,518 - ABIE40_RS07995 0.18 -1.1
1,544,518 - ABIE40_RS07995 0.18 +0.9
1,544,521 + ABIE40_RS07995 0.18 -1.7
1,544,521 + ABIE40_RS07995 0.18 -0.8
1,544,521 + ABIE40_RS07995 0.18 -0.3
1,544,521 + ABIE40_RS07995 0.18 -0.4
1,544,521 + ABIE40_RS07995 0.18 -0.6
1,544,521 + ABIE40_RS07995 0.18 +1.2
1,544,521 + ABIE40_RS07995 0.18 +0.6
1,544,521 + ABIE40_RS07995 0.18 -0.6
1,544,521 + ABIE40_RS07995 0.18 -0.3
1,544,521 + ABIE40_RS07995 0.18 +0.1
1,544,522 - ABIE40_RS07995 0.18 +1.6
1,544,522 - ABIE40_RS07995 0.18 -0.3
1,544,522 - ABIE40_RS07995 0.18 +0.2
1,544,522 - ABIE40_RS07995 0.18 -0.1
1,544,522 - ABIE40_RS07995 0.18 +2.3
1,544,522 - ABIE40_RS07995 0.18 -0.1
1,544,522 - ABIE40_RS07995 0.18 -0.0
1,544,522 - ABIE40_RS07995 0.18 +0.2
1,544,522 - ABIE40_RS07995 0.18 +0.9
1,544,523 + ABIE40_RS07995 0.18 +1.6
1,544,523 + ABIE40_RS07995 0.18 +0.8
1,544,523 + ABIE40_RS07995 0.18 -0.3
1,544,524 - ABIE40_RS07995 0.18 -0.3
1,544,524 - ABIE40_RS07995 0.18 +1.0
1,544,524 - ABIE40_RS07995 0.18 +1.9
1,544,524 - ABIE40_RS07995 0.18 -1.1
1,544,524 - ABIE40_RS07995 0.18 +2.5
1,544,524 - ABIE40_RS07995 0.18 -0.7
1,544,524 - ABIE40_RS07995 0.18 -0.5
1,544,524 - ABIE40_RS07995 0.18 -0.3
1,544,524 - ABIE40_RS07995 0.18 +0.0
1,544,524 - ABIE40_RS07995 0.18 +0.6
1,544,524 - ABIE40_RS07995 0.18 -0.0
1,544,524 - ABIE40_RS07995 0.18 +0.2
1,544,524 - ABIE40_RS07995 0.18 +0.7
1,544,589 + ABIE40_RS07995 0.28 -0.7
1,544,589 + ABIE40_RS07995 0.28 +0.1
1,544,590 - ABIE40_RS07995 0.28 +0.4
1,544,766 + ABIE40_RS07995 0.55 -1.1
1,544,766 + ABIE40_RS07995 0.55 -0.9
1,544,766 + ABIE40_RS07995 0.55 -0.0
1,544,767 - ABIE40_RS07995 0.55 -0.4
1,544,767 - ABIE40_RS07995 0.55 +0.4
1,544,767 - ABIE40_RS07995 0.55 +0.0
1,544,767 - ABIE40_RS07995 0.55 -0.1
1,544,767 - ABIE40_RS07995 0.55 +3.3
1,544,767 - ABIE40_RS07995 0.55 -1.7
1,544,791 - ABIE40_RS07995 0.59 -1.0
1,544,793 + ABIE40_RS07995 0.59 -2.3
1,544,793 + ABIE40_RS07995 0.59 -1.7
1,544,794 - ABIE40_RS07995 0.59 +0.8
1,544,832 + ABIE40_RS07995 0.65 -0.7
1,544,833 - ABIE40_RS07995 0.65 +0.5
1,544,833 - ABIE40_RS07995 0.65 +0.8

Or see this region's nucleotide sequence