Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03380

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03375 and ABIE40_RS03380 are separated by 124 nucleotidesABIE40_RS03380 and ABIE40_RS03385 are separated by 88 nucleotidesABIE40_RS03385 and ABIE40_RS03390 overlap by 4 nucleotides ABIE40_RS03375: ABIE40_RS03375 - YeeE/YedE family protein, at 672,356 to 673,576 _RS03375 ABIE40_RS03380: ABIE40_RS03380 - FAD-binding oxidoreductase, at 673,701 to 674,948 _RS03380 ABIE40_RS03385: ABIE40_RS03385 - isoprenylcysteine carboxylmethyltransferase family protein, at 675,037 to 675,528 _RS03385 ABIE40_RS03390: ABIE40_RS03390 - type III polyketide synthase, at 675,525 to 676,577 _RS03390 Position (kb) 673 674 675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 672.720 kb on + strand, within ABIE40_RS03375at 672.721 kb on - strand, within ABIE40_RS03375at 673.193 kb on - strand, within ABIE40_RS03375at 673.193 kb on - strand, within ABIE40_RS03375at 673.407 kb on + strand, within ABIE40_RS03375at 673.407 kb on + strand, within ABIE40_RS03375at 673.408 kb on - strand, within ABIE40_RS03375at 673.408 kb on - strand, within ABIE40_RS03375at 673.408 kb on - strand, within ABIE40_RS03375at 673.408 kb on - strand, within ABIE40_RS03375at 673.465 kb on - strandat 673.465 kb on - strandat 673.470 kb on + strandat 673.603 kb on + strandat 673.603 kb on + strandat 673.607 kb on - strandat 673.638 kb on + strandat 673.638 kb on + strandat 673.639 kb on - strandat 673.639 kb on - strandat 673.702 kb on + strandat 673.703 kb on - strandat 673.743 kb on - strandat 673.845 kb on - strand, within ABIE40_RS03380at 673.845 kb on - strand, within ABIE40_RS03380at 673.877 kb on + strand, within ABIE40_RS03380at 674.060 kb on - strand, within ABIE40_RS03380at 674.116 kb on + strand, within ABIE40_RS03380at 674.117 kb on - strand, within ABIE40_RS03380at 674.117 kb on - strand, within ABIE40_RS03380at 674.117 kb on - strand, within ABIE40_RS03380at 674.117 kb on - strand, within ABIE40_RS03380at 674.129 kb on - strand, within ABIE40_RS03380at 674.159 kb on - strand, within ABIE40_RS03380at 674.159 kb on - strand, within ABIE40_RS03380at 674.321 kb on - strand, within ABIE40_RS03380at 674.330 kb on - strand, within ABIE40_RS03380at 674.330 kb on - strand, within ABIE40_RS03380at 674.452 kb on + strand, within ABIE40_RS03380at 674.452 kb on + strand, within ABIE40_RS03380at 674.452 kb on + strand, within ABIE40_RS03380at 674.452 kb on + strand, within ABIE40_RS03380at 674.453 kb on - strand, within ABIE40_RS03380at 674.453 kb on - strand, within ABIE40_RS03380at 674.623 kb on + strand, within ABIE40_RS03380at 674.672 kb on - strand, within ABIE40_RS03380at 674.716 kb on + strand, within ABIE40_RS03380at 674.716 kb on + strand, within ABIE40_RS03380at 674.717 kb on - strand, within ABIE40_RS03380at 674.717 kb on - strand, within ABIE40_RS03380at 674.717 kb on - strand, within ABIE40_RS03380at 674.783 kb on - strand, within ABIE40_RS03380at 674.993 kb on - strandat 675.119 kb on + strand, within ABIE40_RS03385at 675.119 kb on + strand, within ABIE40_RS03385at 675.176 kb on + strand, within ABIE40_RS03385at 675.176 kb on + strand, within ABIE40_RS03385at 675.176 kb on + strand, within ABIE40_RS03385at 675.176 kb on + strand, within ABIE40_RS03385at 675.176 kb on + strand, within ABIE40_RS03385at 675.176 kb on + strand, within ABIE40_RS03385at 675.177 kb on - strand, within ABIE40_RS03385at 675.177 kb on - strand, within ABIE40_RS03385at 675.177 kb on - strand, within ABIE40_RS03385at 675.177 kb on - strand, within ABIE40_RS03385at 675.177 kb on - strand, within ABIE40_RS03385at 675.177 kb on - strand, within ABIE40_RS03385at 675.177 kb on - strand, within ABIE40_RS03385at 675.200 kb on + strand, within ABIE40_RS03385at 675.200 kb on + strand, within ABIE40_RS03385at 675.905 kb on + strand, within ABIE40_RS03390at 675.906 kb on - strand, within ABIE40_RS03390

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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672,720 + ABIE40_RS03375 0.30 +0.5
672,721 - ABIE40_RS03375 0.30 +0.4
673,193 - ABIE40_RS03375 0.69 -0.1
673,193 - ABIE40_RS03375 0.69 +1.7
673,407 + ABIE40_RS03375 0.86 -0.7
673,407 + ABIE40_RS03375 0.86 -0.4
673,408 - ABIE40_RS03375 0.86 -3.3
673,408 - ABIE40_RS03375 0.86 -0.2
673,408 - ABIE40_RS03375 0.86 +0.4
673,408 - ABIE40_RS03375 0.86 -0.0
673,465 - -0.7
673,465 - -0.5
673,470 + -0.3
673,603 + -0.6
673,603 + +2.1
673,607 - -2.3
673,638 + -0.9
673,638 + -3.1
673,639 - +0.2
673,639 - -1.9
673,702 + -0.5
673,703 - -0.5
673,743 - +0.8
673,845 - ABIE40_RS03380 0.12 +0.1
673,845 - ABIE40_RS03380 0.12 -0.3
673,877 + ABIE40_RS03380 0.14 +1.3
674,060 - ABIE40_RS03380 0.29 +0.0
674,116 + ABIE40_RS03380 0.33 +0.2
674,117 - ABIE40_RS03380 0.33 +0.8
674,117 - ABIE40_RS03380 0.33 +0.2
674,117 - ABIE40_RS03380 0.33 +0.4
674,117 - ABIE40_RS03380 0.33 +0.0
674,129 - ABIE40_RS03380 0.34 +0.2
674,159 - ABIE40_RS03380 0.37 -0.4
674,159 - ABIE40_RS03380 0.37 -0.0
674,321 - ABIE40_RS03380 0.50 -0.1
674,330 - ABIE40_RS03380 0.50 -0.3
674,330 - ABIE40_RS03380 0.50 -0.1
674,452 + ABIE40_RS03380 0.60 +0.9
674,452 + ABIE40_RS03380 0.60 -0.1
674,452 + ABIE40_RS03380 0.60 -1.4
674,452 + ABIE40_RS03380 0.60 +0.2
674,453 - ABIE40_RS03380 0.60 +0.9
674,453 - ABIE40_RS03380 0.60 +0.1
674,623 + ABIE40_RS03380 0.74 +1.0
674,672 - ABIE40_RS03380 0.78 +0.1
674,716 + ABIE40_RS03380 0.81 +0.7
674,716 + ABIE40_RS03380 0.81 -1.1
674,717 - ABIE40_RS03380 0.81 +0.4
674,717 - ABIE40_RS03380 0.81 -0.8
674,717 - ABIE40_RS03380 0.81 -0.1
674,783 - ABIE40_RS03380 0.87 +0.2
674,993 - -0.0
675,119 + ABIE40_RS03385 0.17 +0.5
675,119 + ABIE40_RS03385 0.17 -1.6
675,176 + ABIE40_RS03385 0.28 +0.3
675,176 + ABIE40_RS03385 0.28 -0.5
675,176 + ABIE40_RS03385 0.28 -2.4
675,176 + ABIE40_RS03385 0.28 +0.4
675,176 + ABIE40_RS03385 0.28 +0.5
675,176 + ABIE40_RS03385 0.28 -1.0
675,177 - ABIE40_RS03385 0.28 +1.4
675,177 - ABIE40_RS03385 0.28 +0.3
675,177 - ABIE40_RS03385 0.28 +0.1
675,177 - ABIE40_RS03385 0.28 +0.6
675,177 - ABIE40_RS03385 0.28 -0.1
675,177 - ABIE40_RS03385 0.28 -2.3
675,177 - ABIE40_RS03385 0.28 -0.2
675,200 + ABIE40_RS03385 0.33 +0.4
675,200 + ABIE40_RS03385 0.33 -0.5
675,905 + ABIE40_RS03390 0.36 -0.3
675,906 - ABIE40_RS03390 0.36 +0.5

Or see this region's nucleotide sequence