Strain Fitness in Escherichia coli BW25113 around b0801

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybiB and ybiC are separated by 140 nucleotidesybiC and ybiJ are separated by 228 nucleotidesybiJ and ybiI are separated by 264 nucleotides b0800: ybiB - hypothetical protein (NCBI), at 834,471 to 835,433 ybiB b0801: ybiC - predicted dehydrogenase (NCBI), at 835,574 to 836,659 ybiC b0802: ybiJ - hypothetical protein (NCBI), at 836,888 to 837,148 ybiJ b0803: ybiI - hypothetical protein (NCBI), at 837,413 to 837,679 ybiI Position (kb) 835 836 837Strain fitness (log2 ratio) -1 0 1at 834.642 kb on + strand, within ybiBat 834.642 kb on + strand, within ybiBat 834.734 kb on - strand, within ybiBat 834.799 kb on + strand, within ybiBat 835.009 kb on - strand, within ybiBat 835.090 kb on + strand, within ybiBat 835.163 kb on + strand, within ybiBat 835.179 kb on - strand, within ybiBat 835.207 kb on + strand, within ybiBat 835.207 kb on + strand, within ybiBat 835.239 kb on - strand, within ybiBat 835.239 kb on - strand, within ybiBat 835.294 kb on - strand, within ybiBat 835.454 kb on + strandat 835.607 kb on + strandat 835.607 kb on + strandat 835.652 kb on - strandat 835.747 kb on + strand, within ybiCat 835.801 kb on + strand, within ybiCat 835.801 kb on + strand, within ybiCat 835.836 kb on + strand, within ybiCat 835.836 kb on + strand, within ybiCat 835.971 kb on - strand, within ybiCat 836.021 kb on - strand, within ybiCat 836.278 kb on + strand, within ybiCat 836.278 kb on + strand, within ybiCat 836.362 kb on - strand, within ybiCat 836.383 kb on - strand, within ybiCat 836.634 kb on - strandat 836.645 kb on + strandat 836.723 kb on - strandat 836.768 kb on - strandat 836.787 kb on - strandat 836.938 kb on + strand, within ybiJat 837.079 kb on - strand, within ybiJat 837.104 kb on + strand, within ybiJat 837.196 kb on - strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.389 kb on + strandat 837.406 kb on + strandat 837.438 kb on - strandat 837.438 kb on - strandat 837.446 kb on + strand, within ybiIat 837.550 kb on - strand, within ybiIat 837.567 kb on - strand, within ybiIat 837.576 kb on - strand, within ybiIat 837.630 kb on + strand, within ybiIat 837.638 kb on - strand, within ybiI

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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834,642 + ybiB b0800 0.18 -0.5
834,642 + ybiB b0800 0.18 -0.1
834,734 - ybiB b0800 0.27 +0.1
834,799 + ybiB b0800 0.34 -0.5
835,009 - ybiB b0800 0.56 -0.7
835,090 + ybiB b0800 0.64 -0.0
835,163 + ybiB b0800 0.72 -1.1
835,179 - ybiB b0800 0.74 +0.1
835,207 + ybiB b0800 0.76 -0.7
835,207 + ybiB b0800 0.76 -0.3
835,239 - ybiB b0800 0.80 -0.7
835,239 - ybiB b0800 0.80 +0.0
835,294 - ybiB b0800 0.85 -0.8
835,454 + +0.1
835,607 + -1.7
835,607 + -0.1
835,652 - +0.0
835,747 + ybiC b0801 0.16 +0.3
835,801 + ybiC b0801 0.21 -1.5
835,801 + ybiC b0801 0.21 +1.1
835,836 + ybiC b0801 0.24 -0.3
835,836 + ybiC b0801 0.24 +0.3
835,971 - ybiC b0801 0.37 -0.3
836,021 - ybiC b0801 0.41 +0.5
836,278 + ybiC b0801 0.65 -0.4
836,278 + ybiC b0801 0.65 +0.9
836,362 - ybiC b0801 0.73 -0.3
836,383 - ybiC b0801 0.74 +0.6
836,634 - +0.6
836,645 + +0.1
836,723 - -0.1
836,768 - -0.6
836,787 - +0.3
836,938 + ybiJ b0802 0.19 -0.1
837,079 - ybiJ b0802 0.73 -1.2
837,104 + ybiJ b0802 0.83 -0.1
837,196 - +0.3
837,320 + +0.3
837,320 + +1.1
837,320 + -0.1
837,320 + +0.9
837,389 + -1.5
837,406 + +0.3
837,438 - +0.7
837,438 - +0.6
837,446 + ybiI b0803 0.12 -0.1
837,550 - ybiI b0803 0.51 -0.4
837,567 - ybiI b0803 0.58 +0.3
837,576 - ybiI b0803 0.61 +0.1
837,630 + ybiI b0803 0.81 +0.1
837,638 - ybiI b0803 0.84 +0.4

Or see this region's nucleotide sequence