Strain Fitness in Serratia liquefaciens MT49 around IAI46_24720

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24715 and IAI46_24720 are separated by 2 nucleotidesIAI46_24720 and IAI46_24725 are separated by 32 nucleotides IAI46_24715: IAI46_24715 - murein hydrolase activator EnvC, at 5,274,871 to 5,276,205 _24715 IAI46_24720: IAI46_24720 - divergent polysaccharide deacetylase family protein, at 5,276,208 to 5,277,173 _24720 IAI46_24725: IAI46_24725 - L-threonine 3-dehydrogenase, at 5,277,206 to 5,278,231 _24725 Position (kb) 5276 5277 5278Strain fitness (log2 ratio) -2 -1 0 1 2at 5275.218 kb on + strand, within IAI46_24715at 5275.218 kb on + strand, within IAI46_24715at 5275.219 kb on + strand, within IAI46_24715at 5275.219 kb on - strand, within IAI46_24715at 5275.219 kb on - strand, within IAI46_24715at 5275.366 kb on - strand, within IAI46_24715at 5275.374 kb on + strand, within IAI46_24715at 5275.375 kb on - strand, within IAI46_24715at 5275.384 kb on + strand, within IAI46_24715at 5275.506 kb on - strand, within IAI46_24715at 5275.506 kb on - strand, within IAI46_24715at 5275.557 kb on + strand, within IAI46_24715at 5275.764 kb on + strand, within IAI46_24715at 5275.765 kb on - strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.768 kb on + strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.769 kb on - strand, within IAI46_24715at 5275.771 kb on - strand, within IAI46_24715at 5275.771 kb on - strand, within IAI46_24715at 5275.841 kb on + strand, within IAI46_24715at 5275.841 kb on + strand, within IAI46_24715at 5275.898 kb on + strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.899 kb on - strand, within IAI46_24715at 5275.950 kb on + strand, within IAI46_24715at 5275.950 kb on + strand, within IAI46_24715at 5275.951 kb on - strand, within IAI46_24715at 5275.993 kb on + strand, within IAI46_24715at 5276.112 kb on - strandat 5276.186 kb on + strandat 5276.215 kb on - strandat 5276.217 kb on - strandat 5276.431 kb on + strand, within IAI46_24720at 5276.432 kb on - strand, within IAI46_24720at 5276.432 kb on - strand, within IAI46_24720at 5276.441 kb on + strand, within IAI46_24720at 5276.441 kb on + strand, within IAI46_24720at 5276.442 kb on - strand, within IAI46_24720at 5276.462 kb on + strand, within IAI46_24720at 5276.462 kb on + strand, within IAI46_24720at 5276.463 kb on - strand, within IAI46_24720at 5276.488 kb on + strand, within IAI46_24720at 5276.488 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.544 kb on - strand, within IAI46_24720at 5276.544 kb on - strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.549 kb on - strand, within IAI46_24720at 5276.553 kb on + strand, within IAI46_24720at 5276.554 kb on - strand, within IAI46_24720at 5276.560 kb on + strand, within IAI46_24720at 5276.560 kb on + strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.641 kb on - strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.650 kb on - strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.748 kb on - strand, within IAI46_24720at 5276.820 kb on - strand, within IAI46_24720at 5276.876 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.956 kb on - strand, within IAI46_24720at 5276.956 kb on - strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.119 kb on + strandat 5277.119 kb on + strandat 5277.120 kb on - strandat 5277.165 kb on - strandat 5277.171 kb on + strandat 5277.171 kb on + strandat 5277.207 kb on + strandat 5277.208 kb on - strandat 5277.208 kb on - strandat 5277.208 kb on - strandat 5277.295 kb on + strandat 5277.295 kb on + strandat 5277.295 kb on + strandat 5277.296 kb on - strandat 5277.301 kb on + strandat 5277.302 kb on - strandat 5277.343 kb on + strand, within IAI46_24725at 5277.343 kb on + strand, within IAI46_24725at 5277.343 kb on + strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.345 kb on + strand, within IAI46_24725at 5277.345 kb on + strand, within IAI46_24725at 5277.372 kb on + strand, within IAI46_24725at 5277.427 kb on + strand, within IAI46_24725at 5277.428 kb on - strand, within IAI46_24725at 5277.428 kb on - strand, within IAI46_24725at 5277.458 kb on - strand, within IAI46_24725at 5277.458 kb on - strand, within IAI46_24725at 5277.653 kb on - strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.687 kb on - strand, within IAI46_24725at 5277.817 kb on + strand, within IAI46_24725at 5277.817 kb on + strand, within IAI46_24725at 5277.818 kb on - strand, within IAI46_24725at 5277.861 kb on + strand, within IAI46_24725at 5277.862 kb on - strand, within IAI46_24725at 5277.862 kb on - strand, within IAI46_24725at 5277.961 kb on + strand, within IAI46_24725at 5278.038 kb on + strand, within IAI46_24725at 5278.039 kb on - strand, within IAI46_24725at 5278.057 kb on + strand, within IAI46_24725at 5278.057 kb on + strand, within IAI46_24725at 5278.097 kb on - strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.103 kb on - strand, within IAI46_24725at 5278.103 kb on - strand, within IAI46_24725at 5278.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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5,275,218 + IAI46_24715 0.26 +0.9
5,275,218 + IAI46_24715 0.26 -0.7
5,275,219 + IAI46_24715 0.26 +0.7
5,275,219 - IAI46_24715 0.26 -0.5
5,275,219 - IAI46_24715 0.26 -0.2
5,275,366 - IAI46_24715 0.37 +0.4
5,275,374 + IAI46_24715 0.38 +1.3
5,275,375 - IAI46_24715 0.38 +0.7
5,275,384 + IAI46_24715 0.38 -1.5
5,275,506 - IAI46_24715 0.48 +0.1
5,275,506 - IAI46_24715 0.48 +0.5
5,275,557 + IAI46_24715 0.51 +0.2
5,275,764 + IAI46_24715 0.67 -0.3
5,275,765 - IAI46_24715 0.67 +0.9
5,275,768 + IAI46_24715 0.67 +0.1
5,275,768 + IAI46_24715 0.67 -0.5
5,275,768 + IAI46_24715 0.67 +0.2
5,275,768 + IAI46_24715 0.67 +0.6
5,275,768 + IAI46_24715 0.67 -1.2
5,275,769 - IAI46_24715 0.67 +0.7
5,275,769 - IAI46_24715 0.67 +2.0
5,275,769 - IAI46_24715 0.67 -0.3
5,275,769 - IAI46_24715 0.67 -0.0
5,275,771 - IAI46_24715 0.67 -0.1
5,275,771 - IAI46_24715 0.67 -0.2
5,275,841 + IAI46_24715 0.73 -0.4
5,275,841 + IAI46_24715 0.73 +0.5
5,275,898 + IAI46_24715 0.77 -0.0
5,275,899 - IAI46_24715 0.77 -0.2
5,275,899 - IAI46_24715 0.77 +1.1
5,275,899 - IAI46_24715 0.77 -0.3
5,275,899 - IAI46_24715 0.77 +0.3
5,275,950 + IAI46_24715 0.81 +0.0
5,275,950 + IAI46_24715 0.81 +0.1
5,275,951 - IAI46_24715 0.81 +1.7
5,275,993 + IAI46_24715 0.84 -0.8
5,276,112 - +0.3
5,276,186 + -0.2
5,276,215 - -1.9
5,276,217 - +1.9
5,276,431 + IAI46_24720 0.23 +0.8
5,276,432 - IAI46_24720 0.23 +0.1
5,276,432 - IAI46_24720 0.23 -0.5
5,276,441 + IAI46_24720 0.24 +0.0
5,276,441 + IAI46_24720 0.24 -0.1
5,276,442 - IAI46_24720 0.24 -0.1
5,276,462 + IAI46_24720 0.26 +0.1
5,276,462 + IAI46_24720 0.26 +0.1
5,276,463 - IAI46_24720 0.26 +0.5
5,276,488 + IAI46_24720 0.29 +0.4
5,276,488 + IAI46_24720 0.29 -1.9
5,276,543 + IAI46_24720 0.35 -0.0
5,276,543 + IAI46_24720 0.35 -2.6
5,276,543 + IAI46_24720 0.35 +0.1
5,276,544 - IAI46_24720 0.35 -0.2
5,276,544 - IAI46_24720 0.35 +0.4
5,276,548 + IAI46_24720 0.35 +0.3
5,276,548 + IAI46_24720 0.35 +1.3
5,276,548 + IAI46_24720 0.35 +0.1
5,276,548 + IAI46_24720 0.35 -0.3
5,276,548 + IAI46_24720 0.35 +0.3
5,276,549 - IAI46_24720 0.35 +0.7
5,276,553 + IAI46_24720 0.36 +0.7
5,276,554 - IAI46_24720 0.36 -0.5
5,276,560 + IAI46_24720 0.36 +0.5
5,276,560 + IAI46_24720 0.36 +0.6
5,276,561 - IAI46_24720 0.37 +0.1
5,276,561 - IAI46_24720 0.37 -0.1
5,276,561 - IAI46_24720 0.37 +0.5
5,276,564 + IAI46_24720 0.37 +1.3
5,276,564 + IAI46_24720 0.37 -0.6
5,276,564 + IAI46_24720 0.37 +0.2
5,276,565 - IAI46_24720 0.37 +0.7
5,276,565 - IAI46_24720 0.37 -0.2
5,276,565 - IAI46_24720 0.37 +0.1
5,276,565 - IAI46_24720 0.37 -0.6
5,276,641 - IAI46_24720 0.45 -0.3
5,276,649 + IAI46_24720 0.46 -0.2
5,276,649 + IAI46_24720 0.46 -0.9
5,276,649 + IAI46_24720 0.46 +0.3
5,276,650 - IAI46_24720 0.46 -1.4
5,276,729 + IAI46_24720 0.54 +0.9
5,276,729 + IAI46_24720 0.54 -0.0
5,276,729 + IAI46_24720 0.54 -0.7
5,276,729 + IAI46_24720 0.54 -0.1
5,276,729 + IAI46_24720 0.54 -1.2
5,276,729 + IAI46_24720 0.54 +0.4
5,276,730 - IAI46_24720 0.54 -0.7
5,276,730 - IAI46_24720 0.54 +0.2
5,276,730 - IAI46_24720 0.54 +0.2
5,276,730 - IAI46_24720 0.54 +0.7
5,276,748 - IAI46_24720 0.56 +0.4
5,276,820 - IAI46_24720 0.63 +1.0
5,276,876 + IAI46_24720 0.69 -0.4
5,276,955 + IAI46_24720 0.77 +0.4
5,276,955 + IAI46_24720 0.77 -1.2
5,276,955 + IAI46_24720 0.77 -0.2
5,276,955 + IAI46_24720 0.77 -0.0
5,276,956 - IAI46_24720 0.77 +0.2
5,276,956 - IAI46_24720 0.77 -0.2
5,277,026 + IAI46_24720 0.85 -0.8
5,277,026 + IAI46_24720 0.85 +0.3
5,277,026 + IAI46_24720 0.85 -0.4
5,277,026 + IAI46_24720 0.85 +0.7
5,277,027 - IAI46_24720 0.85 +0.1
5,277,027 - IAI46_24720 0.85 +0.6
5,277,027 - IAI46_24720 0.85 +0.5
5,277,027 - IAI46_24720 0.85 +0.3
5,277,027 - IAI46_24720 0.85 +0.2
5,277,027 - IAI46_24720 0.85 +0.1
5,277,119 + -0.0
5,277,119 + +0.7
5,277,120 - -0.2
5,277,165 - +0.1
5,277,171 + -0.3
5,277,171 + -0.0
5,277,207 + +0.5
5,277,208 - -0.7
5,277,208 - +1.2
5,277,208 - +0.6
5,277,295 + +1.4
5,277,295 + -0.5
5,277,295 + -0.0
5,277,296 - +0.8
5,277,301 + +0.5
5,277,302 - +0.3
5,277,343 + IAI46_24725 0.13 -0.1
5,277,343 + IAI46_24725 0.13 +0.5
5,277,343 + IAI46_24725 0.13 +0.7
5,277,344 - IAI46_24725 0.13 +0.8
5,277,344 - IAI46_24725 0.13 -0.0
5,277,344 - IAI46_24725 0.13 +0.2
5,277,344 - IAI46_24725 0.13 -0.3
5,277,345 + IAI46_24725 0.14 -0.3
5,277,345 + IAI46_24725 0.14 -0.1
5,277,372 + IAI46_24725 0.16 -0.5
5,277,427 + IAI46_24725 0.22 +0.7
5,277,428 - IAI46_24725 0.22 -0.2
5,277,428 - IAI46_24725 0.22 +0.4
5,277,458 - IAI46_24725 0.25 +0.6
5,277,458 - IAI46_24725 0.25 -0.1
5,277,653 - IAI46_24725 0.44 +0.4
5,277,682 + IAI46_24725 0.46 +0.2
5,277,682 + IAI46_24725 0.46 -0.2
5,277,682 + IAI46_24725 0.46 +0.0
5,277,682 + IAI46_24725 0.46 +0.6
5,277,682 + IAI46_24725 0.46 +0.5
5,277,682 + IAI46_24725 0.46 -0.7
5,277,682 + IAI46_24725 0.46 +0.7
5,277,682 + IAI46_24725 0.46 +0.9
5,277,682 + IAI46_24725 0.46 -0.4
5,277,682 + IAI46_24725 0.46 +0.5
5,277,682 + IAI46_24725 0.46 +1.3
5,277,682 + IAI46_24725 0.46 +0.2
5,277,682 + IAI46_24725 0.46 +0.3
5,277,682 + IAI46_24725 0.46 +0.7
5,277,682 + IAI46_24725 0.46 -0.7
5,277,683 - IAI46_24725 0.46 -0.3
5,277,683 - IAI46_24725 0.46 +0.1
5,277,683 - IAI46_24725 0.46 -0.0
5,277,683 - IAI46_24725 0.46 +0.4
5,277,683 - IAI46_24725 0.46 +0.6
5,277,683 - IAI46_24725 0.46 -0.1
5,277,683 - IAI46_24725 0.46 +1.0
5,277,683 - IAI46_24725 0.46 +0.1
5,277,683 - IAI46_24725 0.46 +0.3
5,277,683 - IAI46_24725 0.46 +0.9
5,277,687 - IAI46_24725 0.47 -0.7
5,277,817 + IAI46_24725 0.60 -0.1
5,277,817 + IAI46_24725 0.60 +0.0
5,277,818 - IAI46_24725 0.60 +0.0
5,277,861 + IAI46_24725 0.64 +0.8
5,277,862 - IAI46_24725 0.64 -0.1
5,277,862 - IAI46_24725 0.64 +1.3
5,277,961 + IAI46_24725 0.74 -0.8
5,278,038 + IAI46_24725 0.81 +0.2
5,278,039 - IAI46_24725 0.81 +1.2
5,278,057 + IAI46_24725 0.83 -1.1
5,278,057 + IAI46_24725 0.83 -0.6
5,278,097 - IAI46_24725 0.87 +0.5
5,278,098 + IAI46_24725 0.87 +0.4
5,278,098 + IAI46_24725 0.87 -0.1
5,278,098 + IAI46_24725 0.87 +0.7
5,278,098 + IAI46_24725 0.87 +0.3
5,278,098 + IAI46_24725 0.87 -0.1
5,278,099 - IAI46_24725 0.87 +0.5
5,278,099 - IAI46_24725 0.87 +1.0
5,278,099 - IAI46_24725 0.87 +0.5
5,278,099 - IAI46_24725 0.87 +0.5
5,278,099 - IAI46_24725 0.87 -0.1
5,278,099 - IAI46_24725 0.87 +0.2
5,278,099 - IAI46_24725 0.87 +0.8
5,278,102 + IAI46_24725 0.87 +0.3
5,278,102 + IAI46_24725 0.87 -0.1
5,278,102 + IAI46_24725 0.87 -0.4
5,278,102 + IAI46_24725 0.87 +1.1
5,278,103 - IAI46_24725 0.87 +0.0
5,278,103 - IAI46_24725 0.87 +0.1
5,278,142 - +0.1

Or see this region's nucleotide sequence