Strain Fitness in Serratia liquefaciens MT49 around IAI46_23290

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23280 and IAI46_23285 are separated by 145 nucleotidesIAI46_23285 and IAI46_23290 are separated by 57 nucleotidesIAI46_23290 and IAI46_23295 are separated by 84 nucleotidesIAI46_23295 and IAI46_23300 overlap by 1 nucleotides IAI46_23280: IAI46_23280 - Trk system potassium transporter TrkA, at 4,974,482 to 4,975,858 _23280 IAI46_23285: IAI46_23285 - large-conductance mechanosensitive channel protein MscL, at 4,976,004 to 4,976,420 _23285 IAI46_23290: IAI46_23290 - alternative ribosome-rescue factor A, at 4,976,478 to 4,976,684 _23290 IAI46_23295: IAI46_23295 - Zn(2+)-responsive transcriptional regulator, at 4,976,769 to 4,977,200 _23295 IAI46_23300: IAI46_23300 - DUF1992 domain-containing protein, at 4,977,200 to 4,977,574 _23300 Position (kb) 4976 4977Strain fitness (log2 ratio) -2 -1 0 1 2at 4975.687 kb on + strand, within IAI46_23280at 4975.786 kb on + strandat 4975.786 kb on + strandat 4975.856 kb on + strandat 4975.866 kb on + strandat 4975.882 kb on + strandat 4975.882 kb on + strandat 4975.883 kb on - strandat 4975.897 kb on - strandat 4975.940 kb on + strandat 4975.940 kb on + strandat 4975.982 kb on - strandat 4976.003 kb on + strandat 4976.003 kb on + strandat 4976.003 kb on + strandat 4976.003 kb on + strandat 4976.004 kb on - strandat 4976.004 kb on - strandat 4976.009 kb on + strandat 4976.009 kb on + strandat 4976.009 kb on + strandat 4976.009 kb on + strandat 4976.010 kb on - strandat 4976.101 kb on + strand, within IAI46_23285at 4976.101 kb on + strand, within IAI46_23285at 4976.120 kb on + strand, within IAI46_23285at 4976.121 kb on - strand, within IAI46_23285at 4976.215 kb on + strand, within IAI46_23285at 4976.216 kb on - strand, within IAI46_23285at 4976.226 kb on + strand, within IAI46_23285at 4976.226 kb on + strand, within IAI46_23285at 4976.227 kb on - strand, within IAI46_23285at 4976.261 kb on + strand, within IAI46_23285at 4976.262 kb on - strand, within IAI46_23285at 4976.277 kb on - strand, within IAI46_23285at 4976.291 kb on + strand, within IAI46_23285at 4976.292 kb on - strand, within IAI46_23285at 4976.308 kb on + strand, within IAI46_23285at 4976.422 kb on - strandat 4976.479 kb on + strandat 4976.505 kb on - strand, within IAI46_23290at 4976.514 kb on + strand, within IAI46_23290at 4976.515 kb on - strand, within IAI46_23290at 4976.515 kb on - strand, within IAI46_23290at 4976.515 kb on - strand, within IAI46_23290at 4976.538 kb on - strand, within IAI46_23290at 4976.613 kb on + strand, within IAI46_23290at 4976.614 kb on - strand, within IAI46_23290at 4976.658 kb on - strand, within IAI46_23290at 4976.663 kb on + strand, within IAI46_23290at 4976.663 kb on + strand, within IAI46_23290at 4976.664 kb on - strandat 4976.664 kb on - strandat 4976.667 kb on - strandat 4976.667 kb on - strandat 4976.667 kb on - strandat 4976.667 kb on - strandat 4976.667 kb on - strandat 4976.687 kb on + strandat 4976.687 kb on + strandat 4976.687 kb on + strandat 4976.705 kb on + strandat 4976.705 kb on + strandat 4976.706 kb on - strandat 4976.706 kb on - strandat 4976.712 kb on - strandat 4976.714 kb on - strandat 4976.714 kb on - strandat 4976.714 kb on - strandat 4976.726 kb on + strandat 4976.726 kb on + strandat 4976.727 kb on - strandat 4976.730 kb on - strandat 4976.833 kb on + strand, within IAI46_23295at 4976.833 kb on + strand, within IAI46_23295at 4976.833 kb on + strand, within IAI46_23295at 4976.834 kb on - strand, within IAI46_23295at 4976.834 kb on - strand, within IAI46_23295at 4976.843 kb on + strand, within IAI46_23295at 4976.844 kb on - strand, within IAI46_23295at 4976.871 kb on - strand, within IAI46_23295at 4976.909 kb on + strand, within IAI46_23295at 4976.910 kb on - strand, within IAI46_23295at 4976.910 kb on - strand, within IAI46_23295at 4976.969 kb on + strand, within IAI46_23295at 4976.970 kb on - strand, within IAI46_23295at 4976.970 kb on - strand, within IAI46_23295at 4977.082 kb on + strand, within IAI46_23295at 4977.113 kb on + strand, within IAI46_23295at 4977.114 kb on - strand, within IAI46_23295at 4977.114 kb on - strand, within IAI46_23295at 4977.139 kb on + strand, within IAI46_23295at 4977.142 kb on + strand, within IAI46_23295at 4977.194 kb on + strandat 4977.255 kb on - strand, within IAI46_23300at 4977.255 kb on - strand, within IAI46_23300at 4977.328 kb on - strand, within IAI46_23300at 4977.385 kb on + strand, within IAI46_23300at 4977.407 kb on + strand, within IAI46_23300at 4977.408 kb on - strand, within IAI46_23300at 4977.411 kb on + strand, within IAI46_23300at 4977.412 kb on - strand, within IAI46_23300at 4977.412 kb on - strand, within IAI46_23300at 4977.412 kb on - strand, within IAI46_23300at 4977.508 kb on + strand, within IAI46_23300at 4977.509 kb on - strand, within IAI46_23300at 4977.541 kb on + strandat 4977.566 kb on + strandat 4977.567 kb on - strandat 4977.574 kb on + strandat 4977.574 kb on + strandat 4977.575 kb on - strandat 4977.575 kb on - strandat 4977.575 kb on - strandat 4977.575 kb on - strandat 4977.575 kb on - strandat 4977.579 kb on + strandat 4977.579 kb on + strandat 4977.580 kb on - strandat 4977.580 kb on - strandat 4977.580 kb on - strandat 4977.580 kb on - strandat 4977.595 kb on + strandat 4977.596 kb on - strandat 4977.596 kb on - strandat 4977.603 kb on - strandat 4977.635 kb on + strandat 4977.635 kb on + strandat 4977.636 kb on - strandat 4977.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,975,687 + IAI46_23280 0.88 +1.2
4,975,786 + +0.5
4,975,786 + +0.5
4,975,856 + +1.0
4,975,866 + -1.0
4,975,882 + -0.2
4,975,882 + +1.0
4,975,883 - -1.0
4,975,897 - -0.2
4,975,940 + -1.1
4,975,940 + +0.6
4,975,982 - +0.0
4,976,003 + +1.1
4,976,003 + +0.2
4,976,003 + +0.3
4,976,003 + -0.5
4,976,004 - -1.2
4,976,004 - +0.2
4,976,009 + +0.3
4,976,009 + +0.4
4,976,009 + +0.7
4,976,009 + -0.2
4,976,010 - +0.9
4,976,101 + IAI46_23285 0.23 +0.3
4,976,101 + IAI46_23285 0.23 -0.1
4,976,120 + IAI46_23285 0.28 +0.2
4,976,121 - IAI46_23285 0.28 -0.4
4,976,215 + IAI46_23285 0.51 +2.0
4,976,216 - IAI46_23285 0.51 +1.8
4,976,226 + IAI46_23285 0.53 +0.5
4,976,226 + IAI46_23285 0.53 +0.3
4,976,227 - IAI46_23285 0.53 +0.7
4,976,261 + IAI46_23285 0.62 +0.9
4,976,262 - IAI46_23285 0.62 +1.0
4,976,277 - IAI46_23285 0.65 +0.5
4,976,291 + IAI46_23285 0.69 -0.1
4,976,292 - IAI46_23285 0.69 +1.1
4,976,308 + IAI46_23285 0.73 -0.3
4,976,422 - +0.5
4,976,479 + -0.0
4,976,505 - IAI46_23290 0.13 -0.3
4,976,514 + IAI46_23290 0.17 +0.1
4,976,515 - IAI46_23290 0.18 +0.1
4,976,515 - IAI46_23290 0.18 +1.0
4,976,515 - IAI46_23290 0.18 -0.7
4,976,538 - IAI46_23290 0.29 -1.3
4,976,613 + IAI46_23290 0.65 -0.3
4,976,614 - IAI46_23290 0.66 -0.3
4,976,658 - IAI46_23290 0.87 +1.3
4,976,663 + IAI46_23290 0.89 -0.7
4,976,663 + IAI46_23290 0.89 -0.3
4,976,664 - +0.8
4,976,664 - -0.3
4,976,667 - +2.1
4,976,667 - +0.5
4,976,667 - +0.2
4,976,667 - -0.1
4,976,667 - +0.2
4,976,687 + +0.3
4,976,687 + +0.7
4,976,687 + +1.0
4,976,705 + +0.6
4,976,705 + +1.3
4,976,706 - +0.4
4,976,706 - -0.0
4,976,712 - +0.2
4,976,714 - +0.6
4,976,714 - +0.1
4,976,714 - -0.1
4,976,726 + -0.1
4,976,726 + -0.2
4,976,727 - +0.0
4,976,730 - -1.9
4,976,833 + IAI46_23295 0.15 -0.4
4,976,833 + IAI46_23295 0.15 +1.0
4,976,833 + IAI46_23295 0.15 +0.5
4,976,834 - IAI46_23295 0.15 +0.3
4,976,834 - IAI46_23295 0.15 -0.4
4,976,843 + IAI46_23295 0.17 +0.3
4,976,844 - IAI46_23295 0.17 +0.7
4,976,871 - IAI46_23295 0.24 +0.2
4,976,909 + IAI46_23295 0.32 +0.4
4,976,910 - IAI46_23295 0.33 +0.5
4,976,910 - IAI46_23295 0.33 -0.4
4,976,969 + IAI46_23295 0.46 -0.4
4,976,970 - IAI46_23295 0.47 -0.1
4,976,970 - IAI46_23295 0.47 +1.7
4,977,082 + IAI46_23295 0.72 -0.3
4,977,113 + IAI46_23295 0.80 -0.1
4,977,114 - IAI46_23295 0.80 +0.0
4,977,114 - IAI46_23295 0.80 +0.6
4,977,139 + IAI46_23295 0.86 +0.6
4,977,142 + IAI46_23295 0.86 -1.2
4,977,194 + +1.0
4,977,255 - IAI46_23300 0.15 +0.9
4,977,255 - IAI46_23300 0.15 -0.5
4,977,328 - IAI46_23300 0.34 -0.2
4,977,385 + IAI46_23300 0.49 +0.9
4,977,407 + IAI46_23300 0.55 +0.4
4,977,408 - IAI46_23300 0.55 +0.1
4,977,411 + IAI46_23300 0.56 +0.5
4,977,412 - IAI46_23300 0.57 +0.4
4,977,412 - IAI46_23300 0.57 -1.6
4,977,412 - IAI46_23300 0.57 +0.2
4,977,508 + IAI46_23300 0.82 -0.7
4,977,509 - IAI46_23300 0.82 -1.9
4,977,541 + +0.3
4,977,566 + -0.2
4,977,567 - +0.9
4,977,574 + +0.7
4,977,574 + -0.1
4,977,575 - +0.2
4,977,575 - -0.3
4,977,575 - -0.5
4,977,575 - +1.2
4,977,575 - +0.5
4,977,579 + -0.7
4,977,579 + -0.7
4,977,580 - -0.2
4,977,580 - +0.2
4,977,580 - -0.2
4,977,580 - +0.2
4,977,595 + -0.3
4,977,596 - -1.0
4,977,596 - +0.5
4,977,603 - +1.5
4,977,635 + -0.3
4,977,635 + -0.2
4,977,636 - +0.2
4,977,680 - -0.9

Or see this region's nucleotide sequence