Strain Fitness in Serratia liquefaciens MT49 around IAI46_23080

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23075 and IAI46_23080 are separated by 114 nucleotidesIAI46_23080 and IAI46_23085 are separated by 221 nucleotides IAI46_23075: IAI46_23075 - maltose ABC transporter permease MalG, at 4,921,358 to 4,922,248 _23075 IAI46_23080: IAI46_23080 - phosphate-starvation-inducible protein PsiE, at 4,922,363 to 4,922,770 _23080 IAI46_23085: IAI46_23085 - capsule assembly Wzi family protein, at 4,922,992 to 4,924,425 _23085 Position (kb) 4922 4923Strain fitness (log2 ratio) -1 0 1 2at 4921.680 kb on - strand, within IAI46_23075at 4921.778 kb on + strand, within IAI46_23075at 4921.778 kb on + strand, within IAI46_23075at 4921.778 kb on + strand, within IAI46_23075at 4921.779 kb on - strand, within IAI46_23075at 4921.779 kb on - strand, within IAI46_23075at 4921.805 kb on + strand, within IAI46_23075at 4921.853 kb on + strand, within IAI46_23075at 4921.854 kb on - strand, within IAI46_23075at 4922.007 kb on + strand, within IAI46_23075at 4922.014 kb on + strand, within IAI46_23075at 4922.077 kb on + strand, within IAI46_23075at 4922.084 kb on + strand, within IAI46_23075at 4922.084 kb on + strand, within IAI46_23075at 4922.084 kb on + strand, within IAI46_23075at 4922.102 kb on - strand, within IAI46_23075at 4922.111 kb on + strand, within IAI46_23075at 4922.111 kb on + strand, within IAI46_23075at 4922.112 kb on - strand, within IAI46_23075at 4922.129 kb on + strand, within IAI46_23075at 4922.133 kb on + strand, within IAI46_23075at 4922.133 kb on + strand, within IAI46_23075at 4922.134 kb on - strand, within IAI46_23075at 4922.134 kb on - strand, within IAI46_23075at 4922.187 kb on + strandat 4922.188 kb on - strandat 4922.247 kb on - strandat 4922.282 kb on - strandat 4922.295 kb on + strandat 4922.296 kb on - strandat 4922.296 kb on - strandat 4922.296 kb on - strandat 4922.296 kb on - strandat 4922.364 kb on + strandat 4922.365 kb on - strandat 4922.365 kb on - strandat 4922.386 kb on + strandat 4922.398 kb on - strandat 4922.398 kb on - strandat 4922.421 kb on - strand, within IAI46_23080at 4922.438 kb on + strand, within IAI46_23080at 4922.438 kb on + strand, within IAI46_23080at 4922.444 kb on - strand, within IAI46_23080at 4922.506 kb on + strand, within IAI46_23080at 4922.506 kb on + strand, within IAI46_23080at 4922.506 kb on + strand, within IAI46_23080at 4922.506 kb on + strand, within IAI46_23080at 4922.507 kb on - strand, within IAI46_23080at 4922.507 kb on - strand, within IAI46_23080at 4922.548 kb on + strand, within IAI46_23080at 4922.610 kb on + strand, within IAI46_23080at 4922.611 kb on - strand, within IAI46_23080at 4922.640 kb on - strand, within IAI46_23080at 4922.770 kb on + strandat 4922.771 kb on - strandat 4922.774 kb on + strandat 4922.775 kb on - strandat 4922.775 kb on - strandat 4922.775 kb on - strandat 4922.783 kb on + strandat 4922.813 kb on - strandat 4922.825 kb on - strandat 4922.884 kb on + strandat 4922.905 kb on + strandat 4922.908 kb on - strandat 4922.933 kb on + strandat 4922.933 kb on + strandat 4922.933 kb on + strandat 4922.934 kb on - strandat 4922.987 kb on + strandat 4922.991 kb on + strandat 4923.000 kb on + strandat 4923.034 kb on - strandat 4923.034 kb on - strandat 4923.068 kb on + strandat 4923.329 kb on - strand, within IAI46_23085at 4923.329 kb on - strand, within IAI46_23085at 4923.454 kb on + strand, within IAI46_23085at 4923.455 kb on - strand, within IAI46_23085at 4923.455 kb on - strand, within IAI46_23085at 4923.501 kb on - strand, within IAI46_23085at 4923.574 kb on - strand, within IAI46_23085at 4923.574 kb on - strand, within IAI46_23085at 4923.574 kb on - strand, within IAI46_23085at 4923.641 kb on - strand, within IAI46_23085at 4923.671 kb on - strand, within IAI46_23085at 4923.712 kb on - strand, within IAI46_23085

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,921,680 - IAI46_23075 0.36 +0.6
4,921,778 + IAI46_23075 0.47 +0.1
4,921,778 + IAI46_23075 0.47 +0.1
4,921,778 + IAI46_23075 0.47 +0.4
4,921,779 - IAI46_23075 0.47 +0.7
4,921,779 - IAI46_23075 0.47 -0.9
4,921,805 + IAI46_23075 0.50 -0.4
4,921,853 + IAI46_23075 0.56 -0.2
4,921,854 - IAI46_23075 0.56 -0.7
4,922,007 + IAI46_23075 0.73 +0.7
4,922,014 + IAI46_23075 0.74 +0.1
4,922,077 + IAI46_23075 0.81 -0.0
4,922,084 + IAI46_23075 0.81 +0.2
4,922,084 + IAI46_23075 0.81 +0.9
4,922,084 + IAI46_23075 0.81 -0.3
4,922,102 - IAI46_23075 0.84 -0.0
4,922,111 + IAI46_23075 0.85 -0.2
4,922,111 + IAI46_23075 0.85 -0.4
4,922,112 - IAI46_23075 0.85 +0.3
4,922,129 + IAI46_23075 0.87 -0.1
4,922,133 + IAI46_23075 0.87 +0.0
4,922,133 + IAI46_23075 0.87 +0.2
4,922,134 - IAI46_23075 0.87 -0.2
4,922,134 - IAI46_23075 0.87 +0.5
4,922,187 + +0.8
4,922,188 - -1.0
4,922,247 - +0.4
4,922,282 - -0.6
4,922,295 + +0.4
4,922,296 - -0.2
4,922,296 - -0.0
4,922,296 - +0.1
4,922,296 - +0.2
4,922,364 + +0.6
4,922,365 - -0.5
4,922,365 - +0.7
4,922,386 + +1.3
4,922,398 - +0.6
4,922,398 - +0.2
4,922,421 - IAI46_23080 0.14 +0.4
4,922,438 + IAI46_23080 0.18 +0.0
4,922,438 + IAI46_23080 0.18 +0.4
4,922,444 - IAI46_23080 0.20 -0.1
4,922,506 + IAI46_23080 0.35 -0.1
4,922,506 + IAI46_23080 0.35 +0.2
4,922,506 + IAI46_23080 0.35 -0.4
4,922,506 + IAI46_23080 0.35 -0.3
4,922,507 - IAI46_23080 0.35 -0.2
4,922,507 - IAI46_23080 0.35 +0.1
4,922,548 + IAI46_23080 0.45 +0.6
4,922,610 + IAI46_23080 0.61 -0.4
4,922,611 - IAI46_23080 0.61 -1.2
4,922,640 - IAI46_23080 0.68 -0.1
4,922,770 + +0.4
4,922,771 - +0.5
4,922,774 + -0.0
4,922,775 - +0.2
4,922,775 - +1.9
4,922,775 - +0.9
4,922,783 + +1.1
4,922,813 - +0.9
4,922,825 - +0.6
4,922,884 + -0.6
4,922,905 + +1.6
4,922,908 - +0.6
4,922,933 + +1.0
4,922,933 + +0.4
4,922,933 + -0.4
4,922,934 - -0.4
4,922,987 + -0.1
4,922,991 + +1.1
4,923,000 + +0.0
4,923,034 - -0.2
4,923,034 - -0.0
4,923,068 + +0.3
4,923,329 - IAI46_23085 0.24 +0.2
4,923,329 - IAI46_23085 0.24 +0.2
4,923,454 + IAI46_23085 0.32 -0.6
4,923,455 - IAI46_23085 0.32 +0.6
4,923,455 - IAI46_23085 0.32 +0.3
4,923,501 - IAI46_23085 0.35 +0.6
4,923,574 - IAI46_23085 0.41 +0.1
4,923,574 - IAI46_23085 0.41 -0.0
4,923,574 - IAI46_23085 0.41 +0.3
4,923,641 - IAI46_23085 0.45 -0.9
4,923,671 - IAI46_23085 0.47 +0.3
4,923,712 - IAI46_23085 0.50 -0.1

Or see this region's nucleotide sequence