Strain Fitness in Serratia liquefaciens MT49 around IAI46_22705

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22700 and IAI46_22705 are separated by 38 nucleotidesIAI46_22705 and IAI46_22710 are separated by 10 nucleotidesIAI46_22710 and IAI46_22715 overlap by 4 nucleotides IAI46_22700: IAI46_22700 - ribonuclease G, at 4,833,136 to 4,834,605 _22700 IAI46_22705: IAI46_22705 - septum formation inhibitor Maf, at 4,834,644 to 4,835,228 _22705 IAI46_22710: IAI46_22710 - rod shape-determining protein MreD, at 4,835,239 to 4,835,727 _22710 IAI46_22715: IAI46_22715 - rod shape-determining protein MreC, at 4,835,724 to 4,836,725 _22715 Position (kb) 4834 4835 4836Strain fitness (log2 ratio) -1 0 1 2at 4833.735 kb on - strand, within IAI46_22700at 4833.778 kb on + strand, within IAI46_22700at 4833.779 kb on - strand, within IAI46_22700at 4833.797 kb on + strand, within IAI46_22700at 4833.797 kb on + strand, within IAI46_22700at 4833.797 kb on + strand, within IAI46_22700at 4833.827 kb on + strand, within IAI46_22700at 4833.827 kb on + strand, within IAI46_22700at 4833.828 kb on - strand, within IAI46_22700at 4833.861 kb on - strand, within IAI46_22700at 4833.861 kb on - strand, within IAI46_22700at 4833.870 kb on + strand, within IAI46_22700at 4833.979 kb on + strand, within IAI46_22700at 4833.980 kb on - strand, within IAI46_22700at 4833.987 kb on - strand, within IAI46_22700at 4834.101 kb on + strand, within IAI46_22700at 4834.171 kb on + strand, within IAI46_22700at 4834.174 kb on - strand, within IAI46_22700at 4834.210 kb on - strand, within IAI46_22700at 4834.469 kb on - strandat 4834.469 kb on - strandat 4834.480 kb on - strandat 4834.480 kb on - strandat 4834.485 kb on + strandat 4834.553 kb on + strandat 4834.553 kb on + strandat 4834.553 kb on + strandat 4834.554 kb on - strandat 4834.581 kb on + strandat 4834.582 kb on - strandat 4834.582 kb on - strandat 4834.592 kb on - strandat 4834.592 kb on - strandat 4834.656 kb on + strandat 4834.656 kb on + strandat 4834.656 kb on + strandat 4834.657 kb on - strandat 4834.657 kb on - strandat 4834.657 kb on - strandat 4834.657 kb on - strandat 4834.657 kb on - strandat 4834.657 kb on - strandat 4834.657 kb on - strandat 4834.657 kb on - strandat 4834.666 kb on - strandat 4834.730 kb on - strand, within IAI46_22705at 4834.793 kb on + strand, within IAI46_22705at 4834.812 kb on - strand, within IAI46_22705at 4834.817 kb on + strand, within IAI46_22705at 4834.817 kb on + strand, within IAI46_22705at 4834.818 kb on - strand, within IAI46_22705at 4834.818 kb on - strand, within IAI46_22705at 4834.818 kb on - strand, within IAI46_22705at 4834.819 kb on + strand, within IAI46_22705at 4834.819 kb on + strand, within IAI46_22705at 4834.820 kb on - strand, within IAI46_22705at 4834.820 kb on - strand, within IAI46_22705at 4834.820 kb on - strand, within IAI46_22705at 4835.013 kb on + strand, within IAI46_22705at 4835.013 kb on + strand, within IAI46_22705at 4835.014 kb on - strand, within IAI46_22705at 4835.098 kb on + strand, within IAI46_22705at 4835.098 kb on + strand, within IAI46_22705at 4835.099 kb on - strand, within IAI46_22705at 4835.182 kb on - strandat 4835.232 kb on + strandat 4835.233 kb on - strandat 4835.233 kb on - strandat 4835.233 kb on - strandat 4835.233 kb on - strandat 4835.235 kb on - strandat 4835.235 kb on - strandat 4835.235 kb on - strandat 4835.235 kb on - strandat 4835.235 kb on - strandat 4835.240 kb on + strandat 4835.240 kb on + strandat 4835.904 kb on - strand, within IAI46_22715

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,833,735 - IAI46_22700 0.41 +1.6
4,833,778 + IAI46_22700 0.44 +0.8
4,833,779 - IAI46_22700 0.44 +0.0
4,833,797 + IAI46_22700 0.45 -0.9
4,833,797 + IAI46_22700 0.45 -1.3
4,833,797 + IAI46_22700 0.45 -0.1
4,833,827 + IAI46_22700 0.47 -0.4
4,833,827 + IAI46_22700 0.47 -0.1
4,833,828 - IAI46_22700 0.47 +2.7
4,833,861 - IAI46_22700 0.49 -1.0
4,833,861 - IAI46_22700 0.49 +0.1
4,833,870 + IAI46_22700 0.50 +0.7
4,833,979 + IAI46_22700 0.57 -1.0
4,833,980 - IAI46_22700 0.57 +0.9
4,833,987 - IAI46_22700 0.58 -1.4
4,834,101 + IAI46_22700 0.66 +0.3
4,834,171 + IAI46_22700 0.70 -0.1
4,834,174 - IAI46_22700 0.71 +0.5
4,834,210 - IAI46_22700 0.73 -0.7
4,834,469 - -1.6
4,834,469 - +0.5
4,834,480 - +0.8
4,834,480 - -0.1
4,834,485 + -0.4
4,834,553 + -1.3
4,834,553 + -0.6
4,834,553 + -0.2
4,834,554 - +0.3
4,834,581 + +0.4
4,834,582 - -0.5
4,834,582 - +0.7
4,834,592 - -0.8
4,834,592 - -0.4
4,834,656 + -0.5
4,834,656 + +0.2
4,834,656 + +0.1
4,834,657 - +0.7
4,834,657 - -0.1
4,834,657 - +0.7
4,834,657 - +0.6
4,834,657 - -0.4
4,834,657 - -0.1
4,834,657 - +0.1
4,834,657 - +0.2
4,834,666 - -0.0
4,834,730 - IAI46_22705 0.15 -0.3
4,834,793 + IAI46_22705 0.25 -0.3
4,834,812 - IAI46_22705 0.29 +1.1
4,834,817 + IAI46_22705 0.30 -0.1
4,834,817 + IAI46_22705 0.30 +0.7
4,834,818 - IAI46_22705 0.30 +1.1
4,834,818 - IAI46_22705 0.30 +0.3
4,834,818 - IAI46_22705 0.30 +0.9
4,834,819 + IAI46_22705 0.30 +0.4
4,834,819 + IAI46_22705 0.30 -0.9
4,834,820 - IAI46_22705 0.30 +1.2
4,834,820 - IAI46_22705 0.30 +0.3
4,834,820 - IAI46_22705 0.30 +0.2
4,835,013 + IAI46_22705 0.63 +0.2
4,835,013 + IAI46_22705 0.63 -0.4
4,835,014 - IAI46_22705 0.63 +0.0
4,835,098 + IAI46_22705 0.78 -0.9
4,835,098 + IAI46_22705 0.78 +0.6
4,835,099 - IAI46_22705 0.78 +1.1
4,835,182 - +0.2
4,835,232 + -1.0
4,835,233 - +0.3
4,835,233 - +0.6
4,835,233 - -0.2
4,835,233 - +0.4
4,835,235 - +1.1
4,835,235 - -0.1
4,835,235 - +0.3
4,835,235 - +0.8
4,835,235 - +1.2
4,835,240 + +0.3
4,835,240 + +0.4
4,835,904 - IAI46_22715 0.18 -0.8

Or see this region's nucleotide sequence