Strain Fitness in Serratia liquefaciens MT49 around IAI46_22395

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22390 and IAI46_22395 are separated by 96 nucleotidesIAI46_22395 and IAI46_22400 are separated by 71 nucleotides IAI46_22390: IAI46_22390 - serine endoprotease DegQ, at 4,771,210 to 4,772,580 _22390 IAI46_22395: IAI46_22395 - outer membrane-stress sensor serine endopeptidase DegS, at 4,772,677 to 4,773,735 _22395 IAI46_22400: IAI46_22400 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,773,807 to 4,775,066 _22400 Position (kb) 4772 4773 4774Strain fitness (log2 ratio) -1 0 1at 4771.693 kb on - strand, within IAI46_22390at 4772.025 kb on + strand, within IAI46_22390at 4772.025 kb on + strand, within IAI46_22390at 4772.026 kb on - strand, within IAI46_22390at 4772.026 kb on - strand, within IAI46_22390at 4772.026 kb on - strand, within IAI46_22390at 4772.064 kb on + strand, within IAI46_22390at 4772.064 kb on + strand, within IAI46_22390at 4772.065 kb on - strand, within IAI46_22390at 4772.563 kb on + strandat 4772.564 kb on - strandat 4772.586 kb on + strandat 4772.587 kb on - strandat 4772.615 kb on + strandat 4772.615 kb on + strandat 4772.616 kb on - strandat 4772.616 kb on - strandat 4772.661 kb on + strandat 4772.665 kb on + strandat 4772.665 kb on + strandat 4772.668 kb on + strandat 4773.733 kb on + strandat 4773.733 kb on + strandat 4773.733 kb on + strandat 4773.734 kb on - strandat 4773.763 kb on + strandat 4773.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,771,693 - IAI46_22390 0.35 -0.2
4,772,025 + IAI46_22390 0.59 -1.2
4,772,025 + IAI46_22390 0.59 +0.8
4,772,026 - IAI46_22390 0.60 +0.7
4,772,026 - IAI46_22390 0.60 -0.1
4,772,026 - IAI46_22390 0.60 -0.8
4,772,064 + IAI46_22390 0.62 -0.2
4,772,064 + IAI46_22390 0.62 -0.0
4,772,065 - IAI46_22390 0.62 -0.1
4,772,563 + +0.2
4,772,564 - +0.2
4,772,586 + +0.3
4,772,587 - +0.2
4,772,615 + +0.1
4,772,615 + +0.7
4,772,616 - -0.1
4,772,616 - +0.1
4,772,661 + +0.5
4,772,665 + +0.9
4,772,665 + +0.3
4,772,668 + +0.1
4,773,733 + +0.3
4,773,733 + +1.7
4,773,733 + +1.3
4,773,734 - +0.0
4,773,763 + +0.3
4,773,776 - -0.3

Or see this region's nucleotide sequence