Strain Fitness in Serratia liquefaciens MT49 around IAI46_21225

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_21220 and IAI46_21225 overlap by 1 nucleotidesIAI46_21225 and IAI46_21230 are separated by 35 nucleotides IAI46_21220: IAI46_21220 - polynucleotide adenylyltransferase PcnB, at 4,496,442 to 4,497,992 _21220 IAI46_21225: IAI46_21225 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 4,497,992 to 4,498,483 _21225 IAI46_21230: IAI46_21230 - two-component system sensor histidine kinase QseC, at 4,498,519 to 4,499,877 _21230 Position (kb) 4497 4498 4499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4497.099 kb on + strand, within IAI46_21220at 4497.100 kb on - strand, within IAI46_21220at 4497.133 kb on - strand, within IAI46_21220at 4497.381 kb on + strand, within IAI46_21220at 4497.381 kb on + strand, within IAI46_21220at 4497.382 kb on - strand, within IAI46_21220at 4497.400 kb on - strand, within IAI46_21220at 4497.400 kb on - strand, within IAI46_21220at 4497.473 kb on + strand, within IAI46_21220at 4497.504 kb on + strand, within IAI46_21220at 4497.504 kb on + strand, within IAI46_21220at 4497.554 kb on + strand, within IAI46_21220at 4497.554 kb on + strand, within IAI46_21220at 4497.555 kb on - strand, within IAI46_21220at 4497.555 kb on - strand, within IAI46_21220at 4497.618 kb on + strand, within IAI46_21220at 4497.618 kb on + strand, within IAI46_21220at 4497.619 kb on - strand, within IAI46_21220at 4497.619 kb on - strand, within IAI46_21220at 4497.692 kb on + strand, within IAI46_21220at 4497.795 kb on + strand, within IAI46_21220at 4497.912 kb on - strandat 4497.990 kb on + strandat 4497.990 kb on + strandat 4498.004 kb on + strandat 4498.472 kb on - strandat 4498.472 kb on - strandat 4498.481 kb on + strandat 4498.507 kb on + strandat 4498.508 kb on - strandat 4498.508 kb on - strandat 4498.509 kb on + strandat 4498.509 kb on + strandat 4498.509 kb on + strandat 4498.509 kb on + strandat 4498.509 kb on + strandat 4498.510 kb on - strandat 4498.510 kb on - strandat 4498.606 kb on + strandat 4498.607 kb on - strandat 4498.607 kb on - strandat 4498.859 kb on + strand, within IAI46_21230at 4498.860 kb on - strand, within IAI46_21230at 4499.178 kb on + strand, within IAI46_21230at 4499.179 kb on - strand, within IAI46_21230at 4499.179 kb on - strand, within IAI46_21230at 4499.229 kb on + strand, within IAI46_21230at 4499.230 kb on - strand, within IAI46_21230at 4499.233 kb on + strand, within IAI46_21230at 4499.234 kb on - strand, within IAI46_21230at 4499.418 kb on - strand, within IAI46_21230

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
4,497,099 + IAI46_21220 0.42 -0.1
4,497,100 - IAI46_21220 0.42 -0.6
4,497,133 - IAI46_21220 0.45 -0.7
4,497,381 + IAI46_21220 0.61 +0.1
4,497,381 + IAI46_21220 0.61 -0.7
4,497,382 - IAI46_21220 0.61 -1.3
4,497,400 - IAI46_21220 0.62 +0.1
4,497,400 - IAI46_21220 0.62 -0.2
4,497,473 + IAI46_21220 0.66 +0.3
4,497,504 + IAI46_21220 0.68 +0.6
4,497,504 + IAI46_21220 0.68 -0.2
4,497,554 + IAI46_21220 0.72 -0.1
4,497,554 + IAI46_21220 0.72 +0.8
4,497,555 - IAI46_21220 0.72 -0.8
4,497,555 - IAI46_21220 0.72 -0.2
4,497,618 + IAI46_21220 0.76 -0.2
4,497,618 + IAI46_21220 0.76 +0.7
4,497,619 - IAI46_21220 0.76 -3.2
4,497,619 - IAI46_21220 0.76 -1.3
4,497,692 + IAI46_21220 0.81 -0.1
4,497,795 + IAI46_21220 0.87 +0.8
4,497,912 - -0.1
4,497,990 + +0.2
4,497,990 + +0.2
4,498,004 + +0.4
4,498,472 - +0.5
4,498,472 - -0.1
4,498,481 + +0.8
4,498,507 + +0.6
4,498,508 - +0.4
4,498,508 - +1.1
4,498,509 + +0.4
4,498,509 + +0.5
4,498,509 + +0.2
4,498,509 + +0.6
4,498,509 + +0.4
4,498,510 - +0.7
4,498,510 - -0.6
4,498,606 + +1.3
4,498,607 - -0.3
4,498,607 - -0.1
4,498,859 + IAI46_21230 0.25 +0.2
4,498,860 - IAI46_21230 0.25 +0.8
4,499,178 + IAI46_21230 0.48 +0.4
4,499,179 - IAI46_21230 0.49 +0.5
4,499,179 - IAI46_21230 0.49 +0.6
4,499,229 + IAI46_21230 0.52 +0.7
4,499,230 - IAI46_21230 0.52 +1.0
4,499,233 + IAI46_21230 0.53 -1.1
4,499,234 - IAI46_21230 0.53 +2.1
4,499,418 - IAI46_21230 0.66 +0.2

Or see this region's nucleotide sequence