Strain Fitness in Serratia liquefaciens MT49 around IAI46_20535

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_20530 and IAI46_20535 are separated by 317 nucleotidesIAI46_20535 and IAI46_20540 are separated by 108 nucleotides IAI46_20530: IAI46_20530 - MFS transporter, at 4,343,513 to 4,344,667 _20530 IAI46_20535: IAI46_20535 - LysR family transcriptional regulator, at 4,344,985 to 4,345,893 _20535 IAI46_20540: IAI46_20540 - MBL fold metallo-hydrolase, at 4,346,002 to 4,346,886 _20540 Position (kb) 4344 4345 4346Strain fitness (log2 ratio) -2 -1 0 1 2at 4344.004 kb on + strand, within IAI46_20530at 4344.004 kb on + strand, within IAI46_20530at 4344.005 kb on - strand, within IAI46_20530at 4344.005 kb on - strand, within IAI46_20530at 4344.005 kb on - strand, within IAI46_20530at 4344.005 kb on - strand, within IAI46_20530at 4344.005 kb on - strand, within IAI46_20530at 4344.005 kb on - strand, within IAI46_20530at 4344.006 kb on + strand, within IAI46_20530at 4344.006 kb on + strand, within IAI46_20530at 4344.006 kb on + strand, within IAI46_20530at 4344.006 kb on + strand, within IAI46_20530at 4344.007 kb on - strand, within IAI46_20530at 4344.011 kb on - strand, within IAI46_20530at 4344.011 kb on - strand, within IAI46_20530at 4344.371 kb on - strand, within IAI46_20530at 4344.397 kb on - strand, within IAI46_20530at 4344.397 kb on - strand, within IAI46_20530at 4344.418 kb on + strand, within IAI46_20530at 4344.419 kb on - strand, within IAI46_20530at 4344.421 kb on + strand, within IAI46_20530at 4344.421 kb on + strand, within IAI46_20530at 4344.422 kb on - strand, within IAI46_20530at 4344.528 kb on + strand, within IAI46_20530at 4344.528 kb on + strand, within IAI46_20530at 4344.638 kb on + strandat 4344.871 kb on - strandat 4344.970 kb on + strandat 4344.971 kb on - strandat 4345.054 kb on + strandat 4345.054 kb on + strandat 4345.055 kb on - strandat 4345.055 kb on - strandat 4345.055 kb on - strandat 4345.083 kb on + strand, within IAI46_20535at 4345.084 kb on - strand, within IAI46_20535at 4345.084 kb on - strand, within IAI46_20535at 4345.084 kb on - strand, within IAI46_20535at 4345.084 kb on - strand, within IAI46_20535at 4345.084 kb on - strand, within IAI46_20535at 4345.085 kb on + strand, within IAI46_20535at 4345.085 kb on + strand, within IAI46_20535at 4345.085 kb on + strand, within IAI46_20535at 4345.085 kb on + strand, within IAI46_20535at 4345.085 kb on + strand, within IAI46_20535at 4345.086 kb on - strand, within IAI46_20535at 4345.086 kb on - strand, within IAI46_20535at 4345.086 kb on - strand, within IAI46_20535at 4345.086 kb on - strand, within IAI46_20535at 4345.086 kb on - strand, within IAI46_20535at 4345.090 kb on - strand, within IAI46_20535at 4345.090 kb on - strand, within IAI46_20535at 4345.095 kb on - strand, within IAI46_20535at 4345.095 kb on - strand, within IAI46_20535at 4345.095 kb on - strand, within IAI46_20535at 4345.156 kb on + strand, within IAI46_20535at 4345.172 kb on + strand, within IAI46_20535at 4345.173 kb on - strand, within IAI46_20535at 4345.175 kb on + strand, within IAI46_20535at 4345.191 kb on + strand, within IAI46_20535at 4345.306 kb on - strand, within IAI46_20535at 4345.313 kb on + strand, within IAI46_20535at 4345.319 kb on + strand, within IAI46_20535at 4345.319 kb on + strand, within IAI46_20535at 4345.319 kb on + strand, within IAI46_20535at 4345.320 kb on - strand, within IAI46_20535at 4345.320 kb on - strand, within IAI46_20535at 4345.320 kb on - strand, within IAI46_20535at 4345.333 kb on - strand, within IAI46_20535at 4345.333 kb on - strand, within IAI46_20535at 4345.333 kb on - strand, within IAI46_20535at 4345.333 kb on - strand, within IAI46_20535at 4345.526 kb on - strand, within IAI46_20535at 4345.605 kb on + strand, within IAI46_20535at 4345.605 kb on + strand, within IAI46_20535at 4345.606 kb on - strand, within IAI46_20535at 4345.606 kb on - strand, within IAI46_20535at 4345.725 kb on + strand, within IAI46_20535at 4345.725 kb on + strand, within IAI46_20535at 4345.725 kb on + strand, within IAI46_20535at 4345.726 kb on - strand, within IAI46_20535at 4345.731 kb on + strand, within IAI46_20535at 4345.731 kb on + strand, within IAI46_20535at 4345.737 kb on + strand, within IAI46_20535at 4345.788 kb on - strand, within IAI46_20535at 4345.864 kb on - strandat 4345.919 kb on - strandat 4345.930 kb on - strandat 4345.959 kb on + strandat 4345.966 kb on + strandat 4345.966 kb on + strandat 4345.966 kb on + strandat 4345.966 kb on + strandat 4345.967 kb on - strandat 4345.968 kb on + strandat 4345.969 kb on - strandat 4345.969 kb on - strandat 4345.969 kb on - strandat 4345.969 kb on - strandat 4345.969 kb on - strandat 4345.997 kb on + strandat 4346.051 kb on + strandat 4346.052 kb on - strandat 4346.095 kb on + strand, within IAI46_20540at 4346.095 kb on + strand, within IAI46_20540at 4346.095 kb on + strand, within IAI46_20540at 4346.096 kb on - strand, within IAI46_20540at 4346.096 kb on - strand, within IAI46_20540at 4346.098 kb on - strand, within IAI46_20540at 4346.098 kb on - strand, within IAI46_20540at 4346.187 kb on + strand, within IAI46_20540at 4346.187 kb on + strand, within IAI46_20540at 4346.246 kb on + strand, within IAI46_20540at 4346.247 kb on - strand, within IAI46_20540at 4346.249 kb on - strand, within IAI46_20540at 4346.276 kb on - strand, within IAI46_20540at 4346.295 kb on + strand, within IAI46_20540at 4346.296 kb on - strand, within IAI46_20540at 4346.317 kb on - strand, within IAI46_20540at 4346.317 kb on - strand, within IAI46_20540at 4346.381 kb on - strand, within IAI46_20540at 4346.515 kb on + strand, within IAI46_20540at 4346.516 kb on - strand, within IAI46_20540at 4346.574 kb on + strand, within IAI46_20540at 4346.575 kb on - strand, within IAI46_20540at 4346.575 kb on - strand, within IAI46_20540at 4346.884 kb on + strandat 4346.885 kb on - strandat 4346.885 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
4,344,004 + IAI46_20530 0.43 -1.1
4,344,004 + IAI46_20530 0.43 +1.1
4,344,005 - IAI46_20530 0.43 +0.5
4,344,005 - IAI46_20530 0.43 +0.1
4,344,005 - IAI46_20530 0.43 -0.7
4,344,005 - IAI46_20530 0.43 -0.3
4,344,005 - IAI46_20530 0.43 +0.3
4,344,005 - IAI46_20530 0.43 +0.1
4,344,006 + IAI46_20530 0.43 +0.1
4,344,006 + IAI46_20530 0.43 +0.2
4,344,006 + IAI46_20530 0.43 +0.8
4,344,006 + IAI46_20530 0.43 +0.2
4,344,007 - IAI46_20530 0.43 +0.8
4,344,011 - IAI46_20530 0.43 +0.4
4,344,011 - IAI46_20530 0.43 +0.2
4,344,371 - IAI46_20530 0.74 +0.6
4,344,397 - IAI46_20530 0.77 +0.0
4,344,397 - IAI46_20530 0.77 +0.4
4,344,418 + IAI46_20530 0.78 +0.6
4,344,419 - IAI46_20530 0.78 +0.3
4,344,421 + IAI46_20530 0.79 +0.2
4,344,421 + IAI46_20530 0.79 +0.5
4,344,422 - IAI46_20530 0.79 +0.0
4,344,528 + IAI46_20530 0.88 +0.9
4,344,528 + IAI46_20530 0.88 -0.2
4,344,638 + +0.1
4,344,871 - +0.5
4,344,970 + -0.3
4,344,971 - -0.0
4,345,054 + +2.5
4,345,054 + +0.5
4,345,055 - +0.1
4,345,055 - -0.2
4,345,055 - +0.3
4,345,083 + IAI46_20535 0.11 +0.3
4,345,084 - IAI46_20535 0.11 +0.1
4,345,084 - IAI46_20535 0.11 +0.2
4,345,084 - IAI46_20535 0.11 -0.2
4,345,084 - IAI46_20535 0.11 -0.3
4,345,084 - IAI46_20535 0.11 +0.4
4,345,085 + IAI46_20535 0.11 +0.4
4,345,085 + IAI46_20535 0.11 +0.0
4,345,085 + IAI46_20535 0.11 +1.0
4,345,085 + IAI46_20535 0.11 -0.5
4,345,085 + IAI46_20535 0.11 -0.5
4,345,086 - IAI46_20535 0.11 +0.2
4,345,086 - IAI46_20535 0.11 +1.0
4,345,086 - IAI46_20535 0.11 -1.0
4,345,086 - IAI46_20535 0.11 -0.2
4,345,086 - IAI46_20535 0.11 +0.9
4,345,090 - IAI46_20535 0.12 +0.3
4,345,090 - IAI46_20535 0.12 +0.2
4,345,095 - IAI46_20535 0.12 -0.4
4,345,095 - IAI46_20535 0.12 -0.7
4,345,095 - IAI46_20535 0.12 -0.8
4,345,156 + IAI46_20535 0.19 -0.7
4,345,172 + IAI46_20535 0.21 -1.0
4,345,173 - IAI46_20535 0.21 -0.1
4,345,175 + IAI46_20535 0.21 -0.1
4,345,191 + IAI46_20535 0.23 +0.1
4,345,306 - IAI46_20535 0.35 -0.3
4,345,313 + IAI46_20535 0.36 -0.5
4,345,319 + IAI46_20535 0.37 -0.0
4,345,319 + IAI46_20535 0.37 +0.0
4,345,319 + IAI46_20535 0.37 +0.8
4,345,320 - IAI46_20535 0.37 -0.1
4,345,320 - IAI46_20535 0.37 +0.3
4,345,320 - IAI46_20535 0.37 -0.2
4,345,333 - IAI46_20535 0.38 +0.4
4,345,333 - IAI46_20535 0.38 -0.5
4,345,333 - IAI46_20535 0.38 +0.9
4,345,333 - IAI46_20535 0.38 -0.1
4,345,526 - IAI46_20535 0.60 +0.3
4,345,605 + IAI46_20535 0.68 -0.7
4,345,605 + IAI46_20535 0.68 -0.0
4,345,606 - IAI46_20535 0.68 +0.3
4,345,606 - IAI46_20535 0.68 -0.3
4,345,725 + IAI46_20535 0.81 +0.5
4,345,725 + IAI46_20535 0.81 +0.5
4,345,725 + IAI46_20535 0.81 -0.7
4,345,726 - IAI46_20535 0.82 +0.5
4,345,731 + IAI46_20535 0.82 +0.4
4,345,731 + IAI46_20535 0.82 +0.0
4,345,737 + IAI46_20535 0.83 -0.7
4,345,788 - IAI46_20535 0.88 -0.0
4,345,864 - -1.4
4,345,919 - -0.7
4,345,930 - -0.7
4,345,959 + +1.6
4,345,966 + +0.1
4,345,966 + -0.3
4,345,966 + -0.4
4,345,966 + +0.5
4,345,967 - -0.4
4,345,968 + -0.7
4,345,969 - +0.3
4,345,969 - +0.7
4,345,969 - -0.7
4,345,969 - -0.1
4,345,969 - +0.8
4,345,997 + -1.0
4,346,051 + +0.6
4,346,052 - +0.2
4,346,095 + IAI46_20540 0.11 +0.6
4,346,095 + IAI46_20540 0.11 -0.1
4,346,095 + IAI46_20540 0.11 -0.3
4,346,096 - IAI46_20540 0.11 -0.1
4,346,096 - IAI46_20540 0.11 -0.2
4,346,098 - IAI46_20540 0.11 -1.8
4,346,098 - IAI46_20540 0.11 +0.2
4,346,187 + IAI46_20540 0.21 -0.6
4,346,187 + IAI46_20540 0.21 +0.8
4,346,246 + IAI46_20540 0.28 +0.3
4,346,247 - IAI46_20540 0.28 +0.2
4,346,249 - IAI46_20540 0.28 +0.7
4,346,276 - IAI46_20540 0.31 -0.2
4,346,295 + IAI46_20540 0.33 -0.4
4,346,296 - IAI46_20540 0.33 +0.7
4,346,317 - IAI46_20540 0.36 +0.5
4,346,317 - IAI46_20540 0.36 +0.7
4,346,381 - IAI46_20540 0.43 +0.8
4,346,515 + IAI46_20540 0.58 +0.2
4,346,516 - IAI46_20540 0.58 +0.5
4,346,574 + IAI46_20540 0.65 +0.1
4,346,575 - IAI46_20540 0.65 -0.2
4,346,575 - IAI46_20540 0.65 -0.2
4,346,884 + -0.7
4,346,885 - +0.5
4,346,885 - +0.0

Or see this region's nucleotide sequence