Strain Fitness in Serratia liquefaciens MT49 around IAI46_19760

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19750 and IAI46_19755 are separated by 224 nucleotidesIAI46_19755 and IAI46_19760 are separated by 68 nucleotidesIAI46_19760 and IAI46_19765 are separated by 37 nucleotides IAI46_19750: IAI46_19750 - MBL fold metallo-hydrolase, at 4,171,208 to 4,172,194 _19750 IAI46_19755: IAI46_19755 - hypothetical protein, at 4,172,419 to 4,172,877 _19755 IAI46_19760: IAI46_19760 - hypothetical protein, at 4,172,946 to 4,173,245 _19760 IAI46_19765: IAI46_19765 - hypothetical protein, at 4,173,283 to 4,174,932 _19765 Position (kb) 4172 4173 4174Strain fitness (log2 ratio) -1 0 1at 4172.048 kb on - strand, within IAI46_19750at 4172.510 kb on + strand, within IAI46_19755at 4172.945 kb on + strandat 4173.062 kb on + strand, within IAI46_19760at 4173.122 kb on + strand, within IAI46_19760at 4173.130 kb on - strand, within IAI46_19760at 4173.339 kb on - strandat 4173.385 kb on + strandat 4173.392 kb on + strandat 4173.829 kb on - strand, within IAI46_19765at 4174.108 kb on - strand, within IAI46_19765at 4174.127 kb on + strand, within IAI46_19765

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,172,048 - IAI46_19750 0.85 +0.6
4,172,510 + IAI46_19755 0.20 -0.5
4,172,945 + +0.5
4,173,062 + IAI46_19760 0.39 -1.6
4,173,122 + IAI46_19760 0.59 +0.4
4,173,130 - IAI46_19760 0.61 +0.3
4,173,339 - +0.1
4,173,385 + +0.3
4,173,392 + +1.7
4,173,829 - IAI46_19765 0.33 +0.4
4,174,108 - IAI46_19765 0.50 -0.8
4,174,127 + IAI46_19765 0.51 +1.5

Or see this region's nucleotide sequence