Strain Fitness in Serratia liquefaciens MT49 around IAI46_19580

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19570 and IAI46_19575 overlap by 4 nucleotidesIAI46_19575 and IAI46_19580 overlap by 1 nucleotidesIAI46_19580 and IAI46_19585 are separated by 30 nucleotidesIAI46_19585 and IAI46_19590 are separated by 213 nucleotides IAI46_19570: IAI46_19570 - SoxR-reducing system protein RseC, at 4,136,846 to 4,137,322 _19570 IAI46_19575: IAI46_19575 - sigma-E factor regulatory protein RseB, at 4,137,319 to 4,138,278 _19575 IAI46_19580: IAI46_19580 - anti-sigma-E factor RseA, at 4,138,278 to 4,138,931 _19580 IAI46_19585: IAI46_19585 - RNA polymerase sigma factor RpoE, at 4,138,962 to 4,139,537 _19585 IAI46_19590: IAI46_19590 - L-aspartate oxidase, at 4,139,751 to 4,141,352 _19590 Position (kb) 4138 4139Strain fitness (log2 ratio) -2 -1 0 1 2at 4137.331 kb on + strandat 4137.331 kb on + strandat 4137.332 kb on - strandat 4137.345 kb on + strandat 4137.346 kb on - strandat 4137.357 kb on + strandat 4137.358 kb on - strandat 4137.358 kb on - strandat 4137.397 kb on - strandat 4137.452 kb on + strand, within IAI46_19575at 4137.453 kb on - strand, within IAI46_19575at 4137.453 kb on - strand, within IAI46_19575at 4137.487 kb on - strand, within IAI46_19575at 4137.505 kb on + strand, within IAI46_19575at 4137.505 kb on + strand, within IAI46_19575at 4137.518 kb on + strand, within IAI46_19575at 4137.519 kb on - strand, within IAI46_19575at 4137.559 kb on - strand, within IAI46_19575at 4137.694 kb on + strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.787 kb on - strand, within IAI46_19575at 4137.805 kb on + strand, within IAI46_19575at 4137.805 kb on + strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.807 kb on + strand, within IAI46_19575at 4137.807 kb on + strand, within IAI46_19575at 4137.807 kb on + strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.813 kb on + strand, within IAI46_19575at 4137.813 kb on + strand, within IAI46_19575at 4137.813 kb on + strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.815 kb on + strand, within IAI46_19575at 4137.815 kb on + strand, within IAI46_19575at 4137.900 kb on - strand, within IAI46_19575at 4137.903 kb on - strand, within IAI46_19575at 4137.929 kb on + strand, within IAI46_19575at 4137.930 kb on - strand, within IAI46_19575at 4137.958 kb on - strand, within IAI46_19575at 4137.976 kb on - strand, within IAI46_19575at 4138.024 kb on + strand, within IAI46_19575at 4138.025 kb on - strand, within IAI46_19575at 4138.050 kb on + strand, within IAI46_19575at 4138.050 kb on + strand, within IAI46_19575at 4138.051 kb on - strand, within IAI46_19575at 4138.051 kb on - strand, within IAI46_19575at 4138.134 kb on + strand, within IAI46_19575at 4138.134 kb on + strand, within IAI46_19575at 4138.148 kb on + strand, within IAI46_19575at 4138.149 kb on - strand, within IAI46_19575at 4138.230 kb on - strandat 4138.250 kb on - strandat 4138.250 kb on - strandat 4138.279 kb on + strandat 4138.280 kb on - strandat 4138.297 kb on - strandat 4138.390 kb on + strand, within IAI46_19580at 4138.391 kb on - strand, within IAI46_19580at 4138.404 kb on - strand, within IAI46_19580at 4138.404 kb on - strand, within IAI46_19580at 4138.964 kb on - strandat 4138.989 kb on - strandat 4138.991 kb on + strandat 4138.992 kb on - strandat 4139.594 kb on - strandat 4139.632 kb on - strandat 4139.707 kb on - strandat 4139.745 kb on + strandat 4139.745 kb on + strandat 4139.745 kb on + strandat 4139.745 kb on + strandat 4139.745 kb on + strandat 4139.745 kb on + strandat 4139.746 kb on - strandat 4139.746 kb on - strandat 4139.746 kb on - strandat 4139.746 kb on - strandat 4139.746 kb on - strandat 4139.746 kb on - strandat 4139.750 kb on + strandat 4139.775 kb on - strandat 4139.782 kb on + strandat 4139.782 kb on + strandat 4139.782 kb on + strandat 4139.849 kb on + strandat 4139.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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4,137,331 + +2.3
4,137,331 + +0.4
4,137,332 - -0.2
4,137,345 + -0.0
4,137,346 - -0.6
4,137,357 + +0.2
4,137,358 - -0.8
4,137,358 - +0.2
4,137,397 - +0.8
4,137,452 + IAI46_19575 0.14 +0.1
4,137,453 - IAI46_19575 0.14 +0.4
4,137,453 - IAI46_19575 0.14 +0.8
4,137,487 - IAI46_19575 0.17 -0.9
4,137,505 + IAI46_19575 0.19 +0.7
4,137,505 + IAI46_19575 0.19 -0.3
4,137,518 + IAI46_19575 0.21 -0.0
4,137,519 - IAI46_19575 0.21 -0.6
4,137,559 - IAI46_19575 0.25 -1.3
4,137,694 + IAI46_19575 0.39 -1.0
4,137,695 - IAI46_19575 0.39 +1.8
4,137,695 - IAI46_19575 0.39 +0.5
4,137,695 - IAI46_19575 0.39 +0.4
4,137,695 - IAI46_19575 0.39 -0.7
4,137,787 - IAI46_19575 0.49 +0.3
4,137,805 + IAI46_19575 0.51 -0.3
4,137,805 + IAI46_19575 0.51 -0.4
4,137,806 - IAI46_19575 0.51 +0.5
4,137,806 - IAI46_19575 0.51 +0.9
4,137,806 - IAI46_19575 0.51 +0.9
4,137,806 - IAI46_19575 0.51 +0.1
4,137,806 - IAI46_19575 0.51 -0.2
4,137,807 + IAI46_19575 0.51 -0.1
4,137,807 + IAI46_19575 0.51 -0.7
4,137,807 + IAI46_19575 0.51 -0.2
4,137,808 - IAI46_19575 0.51 +0.6
4,137,808 - IAI46_19575 0.51 +1.4
4,137,808 - IAI46_19575 0.51 -1.0
4,137,808 - IAI46_19575 0.51 +0.7
4,137,808 - IAI46_19575 0.51 -0.6
4,137,809 + IAI46_19575 0.51 +0.1
4,137,809 + IAI46_19575 0.51 +0.4
4,137,809 + IAI46_19575 0.51 +0.6
4,137,809 + IAI46_19575 0.51 +1.0
4,137,809 + IAI46_19575 0.51 -0.0
4,137,809 + IAI46_19575 0.51 +0.6
4,137,809 + IAI46_19575 0.51 +1.2
4,137,809 + IAI46_19575 0.51 -1.5
4,137,809 + IAI46_19575 0.51 +0.5
4,137,809 + IAI46_19575 0.51 +0.0
4,137,809 + IAI46_19575 0.51 +0.7
4,137,810 - IAI46_19575 0.51 +0.9
4,137,810 - IAI46_19575 0.51 -0.4
4,137,810 - IAI46_19575 0.51 +1.1
4,137,810 - IAI46_19575 0.51 -0.1
4,137,810 - IAI46_19575 0.51 -0.7
4,137,810 - IAI46_19575 0.51 -0.5
4,137,810 - IAI46_19575 0.51 +2.3
4,137,810 - IAI46_19575 0.51 +0.8
4,137,810 - IAI46_19575 0.51 -0.5
4,137,810 - IAI46_19575 0.51 -0.2
4,137,810 - IAI46_19575 0.51 -0.6
4,137,810 - IAI46_19575 0.51 +0.6
4,137,810 - IAI46_19575 0.51 +0.4
4,137,810 - IAI46_19575 0.51 -0.2
4,137,810 - IAI46_19575 0.51 -0.0
4,137,813 + IAI46_19575 0.51 -0.8
4,137,813 + IAI46_19575 0.51 +1.4
4,137,813 + IAI46_19575 0.51 +0.3
4,137,814 - IAI46_19575 0.52 -2.5
4,137,814 - IAI46_19575 0.52 +0.6
4,137,814 - IAI46_19575 0.52 -0.6
4,137,814 - IAI46_19575 0.52 +0.6
4,137,814 - IAI46_19575 0.52 +0.9
4,137,814 - IAI46_19575 0.52 -1.0
4,137,814 - IAI46_19575 0.52 +0.6
4,137,814 - IAI46_19575 0.52 -0.6
4,137,815 + IAI46_19575 0.52 +0.9
4,137,815 + IAI46_19575 0.52 +0.3
4,137,900 - IAI46_19575 0.61 -0.7
4,137,903 - IAI46_19575 0.61 +1.0
4,137,929 + IAI46_19575 0.64 +0.5
4,137,930 - IAI46_19575 0.64 +0.9
4,137,958 - IAI46_19575 0.67 -0.3
4,137,976 - IAI46_19575 0.68 -0.1
4,138,024 + IAI46_19575 0.73 +0.5
4,138,025 - IAI46_19575 0.74 +0.4
4,138,050 + IAI46_19575 0.76 -0.0
4,138,050 + IAI46_19575 0.76 +0.5
4,138,051 - IAI46_19575 0.76 +0.8
4,138,051 - IAI46_19575 0.76 +0.5
4,138,134 + IAI46_19575 0.85 +0.5
4,138,134 + IAI46_19575 0.85 +1.2
4,138,148 + IAI46_19575 0.86 +0.5
4,138,149 - IAI46_19575 0.86 -0.6
4,138,230 - +0.3
4,138,250 - +0.9
4,138,250 - +1.5
4,138,279 + -0.6
4,138,280 - -0.2
4,138,297 - -0.3
4,138,390 + IAI46_19580 0.17 +0.2
4,138,391 - IAI46_19580 0.17 -1.1
4,138,404 - IAI46_19580 0.19 -0.4
4,138,404 - IAI46_19580 0.19 +1.2
4,138,964 - -0.2
4,138,989 - +0.6
4,138,991 + +0.1
4,138,992 - +0.3
4,139,594 - +0.4
4,139,632 - +1.3
4,139,707 - -0.8
4,139,745 + +0.3
4,139,745 + +0.1
4,139,745 + -0.6
4,139,745 + +1.2
4,139,745 + -0.3
4,139,745 + -0.9
4,139,746 - +0.4
4,139,746 - -0.1
4,139,746 - +1.1
4,139,746 - +1.0
4,139,746 - -0.2
4,139,746 - -0.0
4,139,750 + -1.3
4,139,775 - +1.2
4,139,782 + +0.1
4,139,782 + +0.4
4,139,782 + +0.1
4,139,849 + +0.5
4,139,893 - +0.3

Or see this region's nucleotide sequence